PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG608500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 574aa    MW: 60544.4 Da    PI: 6.155
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG608500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_145.31.9e-14118177362
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                          e kr  r+ +NRe+A  sRqRKk+++eeLe kvk+++a   +L  +++  + e a lk++
  Pavir.2NG608500.1.p 118 EAKRRARLVRNRESAHLSRQRKKQYVEELEGKVKAMQATIADLSARISCVTAENAVLKQQ 177
                          78***************************************************9999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.4E-13115180IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.025118178IPR004827Basic-leucine zipper domain
PfamPF001705.2E-13118178IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.6E-16120178No hitNo description
SuperFamilySSF579593.69E-13120178No hitNo description
CDDcd147041.16E-21121172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MAEPTLLAPA APDSFGDFSF AEFQAPVDGA NFAFEDFDLE DLDLDVDFDL DLFASDGPLS  60
QPPPLATSSS SAGSPEGGSS SSGAGGDGGL RNEEPSESSS RSAIGTDGSG KGKAEDDEAK  120
RRARLVRNRE SAHLSRQRKK QYVEELEGKV KAMQATIADL SARISCVTAE NAVLKQQLGG  180
AAGTAPPPPP LPMYPAVYPL PMPWMHPAYA MRGSQVPLVP IPRLKPQQPA PATAEPPAKK  240
ARKTKKVASV SLLGLLCLVM LCGCLIPAVN RMYGPVDGGE GAAFGPSHHG RVLAVEGPRD  300
TVSDSIDPKP PQSTSEALPA LLYLPKNGKH VKINGNLVIK SIVAGEKASL QMSGYDGKSP  360
RNQGKEETSL AIPGYVAPLE AGDVMESTSG MKNKLMALAP ADGNMYREDD GLLPQWFSEA  420
MSGPLLSSGM CTEVFQFDVS PSSAHANGIV PVYSNAMSNS TQNFTENLPS AHPHTVKNRR  480
ISYSEAIPLK GSTSNNTEHL KTPPKNESFG SMKPVSSVVV SVLADPREAG DGNGEGRISS  540
KSLSRIFVVV LIDSVKYVTY SCVLPFKNHS PHL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.158560.0callus| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269|PubMed:22050533}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG608500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000305|PubMed:22050533}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800125.10.0bZIP transcription factor 60-like
SwissprotQ8LIB30.0BZP60_ORYSJ; bZIP transcription factor 60
TrEMBLA0A2S3H4T70.0A0A2S3H4T7_9POAL; Uncharacterized protein
TrEMBLA0A2T7EZC20.0A0A2T7EZC2_9POAL; Uncharacterized protein
STRINGPavir.Ba00049.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111793035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40950.11e-72bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Oono Y, et al.
    Analysis of ER stress in developing rice endosperm accumulating beta-amyloid peptide.
    Plant Biotechnol. J., 2010. 8(6): p. 691-718
    [PMID:20331531]
  3. Hu J, et al.
    The Bphi008a gene interacts with the ethylene pathway and transcriptionally regulates MAPK genes in the response of rice to brown planthopper feeding.
    Plant Physiol., 2011. 156(2): p. 856-72
    [PMID:21487048]
  4. Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F
    A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response.
    Plant Cell Physiol., 2012. 53(1): p. 144-53
    [PMID:22084314]
  5. Ohta M, et al.
    Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants.
    J. Exp. Bot., 2013. 64(18): p. 5429-41
    [PMID:24153418]
  6. Cheng Q, et al.
    An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice.
    Plant Biol (Stuttg), 2015. 17(2): p. 419-29
    [PMID:25255693]