PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2NG568100.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

HRT-like

Protein Properties

Length: 578aa MW: 62671.7 Da PI: 9.0538

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2NG568100.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	55.3	1.1e-17	314	343	2	31
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CGv ledGs C ++Pv+gRKRC HKG+R+ Pavir.2NG568100.2.p 314 CGVVLEDGSSCLEHPVEGRKRCSSHKGRRV 343 *****************************7 PP
2	HRT-like	51.4	1.8e-16	541	570	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 +CG+++ dGs+C+++P++gRKRC+ HKG+R Pavir.2NG568100.2.p 541 TCGARTPDGSPCMNKPIEGRKRCALHKGQR 570 7****************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00465	0.0071	77	184	IPR000305	GIY-YIG nuclease superfamily

Sequence ? help Back to Top
Protein Sequence Length: 578 aa Download sequence Send to blast
MPAAAAPAPA VTTRLKREDC PRTKHDSLFS PLKVLVGPSD WEDHSAGKEG VQRYRIRNLP 60 DNFPGLYELG VAGASDEGAR ARRRDSRGVV VVYLGQADSV RARLQQYGRS GSHLDTGNSL 120 GSAGKDEANV VTAAAGPGLF TEVFSRGYSI VFRCALMDNK QEAEKTEALL LRVFDYAWNK 180 LQNGACRREE ILLKLEQGAA SHRSSLLSRV RHMKQDIFGV KAGIKIKGSG SVNTSPGIMK 240 SMLPRVRTFV GFRPQLVNSE DSGGEAIDIP SKKISGIPCG NRQAHRRRSE GHKVKKIDVT 300 KRRTVPIQES NSFCGVVLED GSSCLEHPVE GRKRCSSHKG RRVKGSPKSS STSYPCQAEI 360 PIPRLTEALD NLDRTQEVIE SIPHLTEDLD NSDRAQESEI LPKNISVTVE ESLRQSNSIK 420 AEEVKTREAP TEDGTHDASQ DACICEEKAS LAEPESQEPQ PSGRIWFELL KAQKKSASTH 480 APRGSGSQTR MRDHATPICG AVADNGSCKM VPIAGRKVCV QDSGIEVAGA SFSRSSGWPC 540 TCGARTPDGS PCMNKPIEGR KRCALHKGQR ASCSLTQ*

Sequence ? help Back to Top

Protein Sequence Length: 578 aa Download sequence Send to blast

MPAAAAPAPA VTTRLKREDC PRTKHDSLFS PLKVLVGPSD WEDHSAGKEG VQRYRIRNLP  60
DNFPGLYELG VAGASDEGAR ARRRDSRGVV VVYLGQADSV RARLQQYGRS GSHLDTGNSL  120
GSAGKDEANV VTAAAGPGLF TEVFSRGYSI VFRCALMDNK QEAEKTEALL LRVFDYAWNK  180
LQNGACRREE ILLKLEQGAA SHRSSLLSRV RHMKQDIFGV KAGIKIKGSG SVNTSPGIMK  240
SMLPRVRTFV GFRPQLVNSE DSGGEAIDIP SKKISGIPCG NRQAHRRRSE GHKVKKIDVT  300
KRRTVPIQES NSFCGVVLED GSSCLEHPVE GRKRCSSHKG RRVKGSPKSS STSYPCQAEI  360
PIPRLTEALD NLDRTQEVIE SIPHLTEDLD NSDRAQESEI LPKNISVTVE ESLRQSNSIK  420
AEEVKTREAP TEDGTHDASQ DACICEEKAS LAEPESQEPQ PSGRIWFELL KAQKKSASTH  480
APRGSGSQTR MRDHATPICG AVADNGSCKM VPIAGRKVCV QDSGIEVAGA SFSRSSGWPC  540
TCGARTPDGS PCMNKPIEGR KRCALHKGQR ASCSLTQ*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.19352	0.0	root\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2NG568100.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025802669.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBL	A0A3L6TB25	0.0	A0A3L6TB25_PANMI; Uncharacterized protein
STRING	Pavir.Ba01074.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	4e-62	effector of transcription2

Link Out ? help Back to Top
Phytozome	Pavir.2NG568100.2.p