PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2NG568100.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

HRT-like

Protein Properties

Length: 591aa MW: 64086.1 Da PI: 8.7258

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2NG568100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	55.3	1.1e-17	327	356	2	31
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CGv ledGs C ++Pv+gRKRC HKG+R+ Pavir.2NG568100.1.p 327 CGVVLEDGSSCLEHPVEGRKRCSSHKGRRV 356 *****************************7 PP
2	HRT-like	51.3	1.9e-16	554	583	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 +CG+++ dGs+C+++P++gRKRC+ HKG+R Pavir.2NG568100.1.p 554 TCGARTPDGSPCMNKPIEGRKRCALHKGQR 583 7****************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00465	0.0071	90	197	IPR000305	GIY-YIG nuclease superfamily

Sequence ? help Back to Top
Protein Sequence Length: 591 aa Download sequence Send to blast
MRAPQDLAHG ACLFAISHRI SVPSRNILGS DSYPICASSS DFSHFQVLVG PSDWEDHSAG 60 KEGVQRYRIR NLPDNFPGLY ELGVAGASDE GARARRRDSR GVVVVYLGQA DSVRARLQQY 120 GRSGSHLDTG NSLGSAGKDE ANVVTAAAGP GLFTEVFSRG YSIVFRCALM DNKQEAEKTE 180 ALLLRVFDYA WNKLQNGACR REEILLKLEQ GAASHRSSLL SRVRHMKQDI FGVKAGIKIK 240 GSGSVNTSPG IMKSMLPRVR TFVGFRPQLV NSEDSGGEAI DIPSKKISGI PCGNRQAHRR 300 RSEGHKVKKI DVTKRRTVPI QESNSFCGVV LEDGSSCLEH PVEGRKRCSS HKGRRVKGSP 360 KSSSTSYPCQ AEIPIPRLTE ALDNLDRTQE VIESIPHLTE DLDNSDRAQE SEILPKNISV 420 TVEESLRQSN SIKAEEVKTR EAPTEDGTHD ASQDACICEE KASLAEPESQ EPQPSGRIWF 480 ELLKAQKKSA STHAPRGSGS QTRMRDHATP ICGAVADNGS CKMVPIAGRK VCVQDSGIEV 540 AGASFSRSSG WPCTCGARTP DGSPCMNKPI EGRKRCALHK GQRASCSLTQ *

Sequence ? help Back to Top

Protein Sequence Length: 591 aa Download sequence Send to blast

MRAPQDLAHG ACLFAISHRI SVPSRNILGS DSYPICASSS DFSHFQVLVG PSDWEDHSAG  60
KEGVQRYRIR NLPDNFPGLY ELGVAGASDE GARARRRDSR GVVVVYLGQA DSVRARLQQY  120
GRSGSHLDTG NSLGSAGKDE ANVVTAAAGP GLFTEVFSRG YSIVFRCALM DNKQEAEKTE  180
ALLLRVFDYA WNKLQNGACR REEILLKLEQ GAASHRSSLL SRVRHMKQDI FGVKAGIKIK  240
GSGSVNTSPG IMKSMLPRVR TFVGFRPQLV NSEDSGGEAI DIPSKKISGI PCGNRQAHRR  300
RSEGHKVKKI DVTKRRTVPI QESNSFCGVV LEDGSSCLEH PVEGRKRCSS HKGRRVKGSP  360
KSSSTSYPCQ AEIPIPRLTE ALDNLDRTQE VIESIPHLTE DLDNSDRAQE SEILPKNISV  420
TVEESLRQSN SIKAEEVKTR EAPTEDGTHD ASQDACICEE KASLAEPESQ EPQPSGRIWF  480
ELLKAQKKSA STHAPRGSGS QTRMRDHATP ICGAVADNGS CKMVPIAGRK VCVQDSGIEV  540
AGASFSRSSG WPCTCGARTP DGSPCMNKPI EGRKRCALHK GQRASCSLTQ *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.19352	0.0	root\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2NG568100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025802669.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBL	A0A3L6TB25	0.0	A0A3L6TB25_PANMI; Uncharacterized protein
STRING	Pavir.Ba01074.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7948	34	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	8e-56	effector of transcription2

Link Out ? help Back to Top
Phytozome	Pavir.2NG568100.1.p