PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2NG560500.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | WRKY | ||||||||
Protein Properties | Length: 612aa MW: 65423.6 Da PI: 6.5091 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.7 | 8.5e-32 | 229 | 286 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkk +ers d++++e++Y+g Hnh+k Pavir.2NG560500.2.p 229 EDGYNWRKYGQKHVKGSENPRSYYKCTHPNCEVKKLLERSL-DGQITEVVYKGIHNHPK 286 8****************************************.***************85 PP | |||||||
2 | WRKY | 107.4 | 6.9e-34 | 402 | 460 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++dpk v++tYeg+Hnhe Pavir.2NG560500.2.p 402 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHTGCPVRKHVERASHDPKSVITTYEGKHNHE 460 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.6E-27 | 219 | 287 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.25 | 223 | 287 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.37E-25 | 227 | 287 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.5E-35 | 228 | 286 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.3E-24 | 229 | 285 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.0E-38 | 387 | 462 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.89E-30 | 394 | 462 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.297 | 397 | 462 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.5E-40 | 402 | 461 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-26 | 403 | 460 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 612 aa Download sequence Send to blast |
MADSPNPSSG DLPAGSGGSP EKPVLADRRV AALAGAGAGA RYKAMSPARL PISREPCLTI 60 PAGFSPGALL DSPVLLNNFK VEPSPTTGTL SMAAIINKST HLDILPSPRD RSAGSGHEDG 120 DSRDFEFKPH LSCQPAGPAV NDPNHHDTSM QNHTSSSSNL MTENKSLYSR ESIHQTANIS 180 SVPNQPVAIV GPSDNMPADV GTSEMNQMNS SENAAQETQT ENVAEKSAED GYNWRKYGQK 240 HVKGSENPRS YYKCTHPNCE VKKLLERSLD GQITEVVYKG IHNHPKPQPN RRLSAGAVPS 300 SQGEERYDGA APVEDKPSNI YPNLCNQVHS AGMIEPVPGP ASGDDGDGGG GRPYPGDDAN 360 EDDDLDSKRR KMESAGIDAA LMGKPNREPR VVVQTVSEVD ILDDGYRWRK YGQKVVKGNP 420 NPRSYYKCTH TGCPVRKHVE RASHDPKSVI TTYEGKHNHE VPASRNASHE MSAAPMKPAV 480 HPINSSMPGL GGMMRACDGR AFTNQYSQAA ESDTISLDLG VGISLNHSDA TNQMHPSVPE 540 PMQYQMQHMA PVYGSMGFPG MPVPTVPGNA ASNVYGSREE KANEGFTFKA TPLDRSANLC 600 YSSAGNLVMG P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-36 | 229 | 463 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 4e-36 | 229 | 463 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.6246 | 0.0 | callus| leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Peak of expression 12 days after pollination. {ECO:0000269|PubMed:12953112}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in endosperm, but not in leaves. {ECO:0000269|PubMed:12953112}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2NG560500.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054888 | 0.0 | BT054888.1 Zea mays full-length cDNA clone ZM_BFc0109P23 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025801894.1 | 0.0 | WRKY transcription factor SUSIBA2-like isoform X1 | ||||
Swissprot | Q6VWJ6 | 0.0 | WRK46_HORVU; WRKY transcription factor SUSIBA2 | ||||
TrEMBL | A0A3L6QQW0 | 0.0 | A0A3L6QQW0_PANMI; WRKY transcription factor SUSIBA2-like | ||||
STRING | Si029245m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26640.2 | 1e-118 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2NG560500.2.p |