PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG546100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 291aa    MW: 32151.3 Da    PI: 8.4203
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG546100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.4e-06262284223
                          EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                          +Cp+C+k F+++ +L+ H  + H
  Pavir.2NG546100.1.p 262 VCPKCSKAFRDPVLLVEHVEReH 284
                          7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183106.8E-13457No hitNo description
PROSITE profilePS510397.5031059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.107.1E-111050IPR000058Zinc finger, AN1-type
PfamPF014289.1E-141350IPR000058Zinc finger, AN1-type
SMARTSM001540.00231352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.102.7E-1091146IPR000058Zinc finger, AN1-type
SuperFamilySSF1183107.46E-993141No hitNo description
PROSITE profilePS510397.72298146IPR000058Zinc finger, AN1-type
PfamPF014283.3E-8101139IPR000058Zinc finger, AN1-type
SMARTSM001540.11101142IPR000058Zinc finger, AN1-type
SMARTSM003550.27224247IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280226247IPR007087Zinc finger, C2H2
PROSITE profilePS501578.85261289IPR007087Zinc finger, C2H2
SMARTSM003556.3261284IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280263284IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGTPEFPNLG KHCSVGDCNQ IDFLPFTCDR CDHVFCLQHR SYTTHQCPNA NMKDVTVLIC  60
PLCAQGVRLN PSEDPNITWD THVNTDCDPS NYQKVTKKQK CPVPGCRETL TFSNTIRCKD  120
CTREHCLKHR FGPDHKCPGP RTVDSGFPFV NMLRRSQKAE TRPSSSSKNS SSWWSSSLVN  180
AATNFKSSAE ARMQKLSIAT SQAFQKAKDG ISPNSSGSSG NLVEECVHCP ARFSTVGALI  240
EHVEKSHQKK QQPSRGQVTV DVCPKCSKAF RDPVLLVEHV EREHGGTSRA *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.375840.0callus| leaf
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG546100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0412060.0BT041206.1 Zea mays full-length cDNA clone ZM_BFc0188K19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804303.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
SwissprotQ0D5B91e-168SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A3L6QU760.0A0A3L6QU76_PANMI; AN1-type zinc finger protein 2B
STRINGPavir.Ba00594.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47633342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-114C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]