PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG467900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 500aa    MW: 54118.5 Da    PI: 9.9734
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG467900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.76.7e-10210252345
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                          + k++rr+++NReAAr+sR RKka+i eLe   ++L +  ++L
  Pavir.2NG467900.1.p 210 DQKVQRRLAQNREAARKSRMRKKAYIVELESSRAKLAQLEQEL 252
                          679***************************9888887766655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.4E-7208287IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.519210254IPR004827Basic-leucine zipper domain
PfamPF001704.8E-7211252IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.66E-7212255No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-8212256No hitNo description
PROSITE patternPS000360215230IPR004827Basic-leucine zipper domain
PfamPF141449.3E-28295370IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MRCPASRPVL SLTVHIHPRC TARQQPSWSA VPRRRIARRR RRCFALVPVA VHPRPTMHPH  60
PSHAFRAEQG AGGYHHHHRG VGDGALLPEL PRSPNPSSKS SSNLTAATLL APLAVAHGGV  120
APSFGMAPPG MASAADDGRF CLPWAAAHFE NWGDSGGIVV TSPLTETTCT DADDASGDRQ  180
PAQMGGGAIT QSVAAYMDSC AASKEGSCRD QKVQRRLAQN REAARKSRMR KKAYIVELES  240
SRAKLAQLEQ ELQRARQQGM FIASGRTGDH GGSTGGASAA FDLEYARWLD EHQRHMTDLR  300
VALGAQLGDD DLRVLVDGAM LHYEQLFRLK GAATRADVFH VLSGMWVSPA ERFFMWLGGF  360
RSSELLAVLA RQVEPLTEQQ LVGLCSLRQS SQQAEDALSQ GIEALQQALA DTLAAAGASA  420
AGAAADGVTN YMGQMAVAMG KLATVENFLR QADLLRQQTL QQMRRILTTR QAARALLVVS  480
DYFSRLRALS SLWLTRPRD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG467900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0851450.0BT085145.1 Zea mays full-length cDNA clone ZM_BFb0304K15 mRNA, complete cds.
GenBankKJ7275600.0KJ727560.1 Zea mays clone pUT5420 bZIP transcription factor (bZIP57) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660509.20.0transcription factor TGAL3
SwissprotQ5Z6N91e-169TGAL3_ORYSJ; Transcription factor TGAL3
TrEMBLA0A368QTE50.0A0A368QTE5_SETIT; Uncharacterized protein
STRINGPavir.J20659.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.12e-88bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]