PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG452600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 347aa    MW: 38143.7 Da    PI: 10.477
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG452600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.3e-17119166148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+WT+eEd++lv ++k +G g+W++ ++  g+ R++k+c++rw +yl
  Pavir.2NG452600.1.p 119 KGAWTKEEDDRLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 166
                          79******************************99************97 PP
2Myb_DNA-binding59.57.3e-19172216147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg++T+eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++
  Pavir.2NG452600.1.p 172 RGNFTEEEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 216
                          89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-23110169IPR009057Homeodomain-like
PROSITE profilePS5129416.58114166IPR017930Myb domain
SuperFamilySSF466891.2E-29118213IPR009057Homeodomain-like
SMARTSM007171.9E-13118168IPR001005SANT/Myb domain
PfamPF002497.3E-15119166IPR001005SANT/Myb domain
CDDcd001673.88E-10121166No hitNo description
PROSITE profilePS5129429.411167221IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-28170221IPR009057Homeodomain-like
SMARTSM007176.3E-18171219IPR001005SANT/Myb domain
PfamPF002494.9E-17172216IPR001005SANT/Myb domain
CDDcd001676.47E-13174217No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010224Biological Processresponse to UV-B
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0090379Biological Processsecondary cell wall biogenesis involved in seed trichome differentiation
GO:1903086Biological Processnegative regulation of sinapate ester biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MRSWRPGPGK REAYRPNLFP PNSASPLEDL SSPRSSQVPI KSRPPSTHPW RSQAPQQKAA  60
ATSTAAARPP HRGKGREGKK AAAKRILGKA ASNIAGRSGL GSSAAMGRSP CCEKAHTNKG  120
AWTKEEDDRL VAYIKAHGEG CWRSLPKAAG LLRCGKSCRL RWINYLRPDL KRGNFTEEED  180
ELIIKLHSLL GNKWSLIAGR LPGRTDNEIK NYWNTHIRRK LLSRGIDPVT HRPINEHASN  240
ITISFEAARE EKGAVFRLEE PKAAAIGRDQ NPGDWGHGKP LKCPDLNLDL CISPPCQEEP  300
LKPVKREAGL CFSCSLGLPK SAECKCSSFL GGLRTAMLDF RSLEMK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-2811822126128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.258631e-168root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Germinating seed and apical meristem of shoot and root.
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00479DAPTransfer from AT4G38620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG452600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794100.0HF679410.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB4 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803176.11e-168myb-related protein Hv1-like
SwissprotP200261e-135MYB1_HORVU; Myb-related protein Hv1
TrEMBLA0A2S3H1Q91e-167A0A2S3H1Q9_9POAL; Uncharacterized protein
STRINGPavir.Ba01213.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-100myb domain protein 4