PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2NG431300.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HSF | ||||||||
Protein Properties | Length: 402aa MW: 41725.3 Da PI: 4.7249 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 112.9 | 2.1e-35 | 42 | 133 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 Fl+k+y++++d++++++isw+e+g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ F++g+k Pavir.2NG431300.3.p 42 FLTKTYQLVDDPAVDDVISWNEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGEK 122 9*****************************************************************99.........************* PP XXXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkks 102 +ll++i+r+k Pavir.2NG431300.3.p 123 RLLCDIHRRKV 133 ********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.8E-38 | 32 | 126 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 5.6E-59 | 38 | 131 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 3.7E-35 | 39 | 131 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.3E-20 | 42 | 65 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 8.2E-32 | 42 | 131 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-20 | 80 | 92 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 81 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-20 | 93 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MAEQGGATGE AGGGSEPPAL APAPAPPPAA EAAGQRSLPT PFLTKTYQLV DDPAVDDVIS 60 WNEDGSTFVV WRPAEFARDL LPKYFKHNNF SSFVRQLNTY GFRKIVPDRW EFANDCFRRG 120 EKRLLCDIHR RKVAPVPAAP AAALATAAAA AASGAVTVAA APIPMALPVP LPGSPALSSD 180 EQVLSSNSGS DHPQAAPSGS GGASASGDTG EENERLRREN ARLTRELAQM KKLCNNILLL 240 MTKYASSQQL DASAALSSVV NCSGESSEAV PPPPPLPPAI LDLMPSCPGL ATAAAGLVAD 300 ADPDQAARLF GVSIGLKRAR EDDGDTGEEE EPAGHGGSGA EVKTEEASDP RQHPSGSSKE 360 PSPDQHPWPI YRPTPVHPSM RPSCNGPDQG AGSDQDGSNS R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 4e-26 | 32 | 131 | 20 | 129 | Heat shock factor protein 1 |
5d5v_B | 4e-26 | 32 | 131 | 20 | 129 | Heat shock factor protein 1 |
5d5v_D | 4e-26 | 32 | 131 | 20 | 129 | Heat shock factor protein 1 |
5hdg_A | 4e-26 | 42 | 131 | 10 | 110 | Heat shock factor protein 1 |
5hdn_A | 4e-26 | 42 | 131 | 10 | 110 | Heat shock factor protein 1 |
5hdn_B | 4e-26 | 42 | 131 | 10 | 110 | Heat shock factor protein 1 |
5hdn_C | 4e-26 | 42 | 131 | 10 | 110 | Heat shock factor protein 1 |
5hdn_D | 4e-26 | 42 | 131 | 10 | 110 | Heat shock factor protein 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.16860 | 0.0 | root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00575 | DAP | Transfer from AT5G62020 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2NG431300.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957414.1 | 0.0 | heat stress transcription factor B-2c isoform X2 | ||||
Swissprot | Q652B0 | 1e-151 | HFB2C_ORYSJ; Heat stress transcription factor B-2c | ||||
TrEMBL | A0A368Q422 | 0.0 | A0A368Q422_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J03297.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11660.1 | 3e-59 | HSF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2NG431300.3.p |
Publications ? help Back to Top | |||
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