PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2NG424500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 257aa MW: 28127.6 Da PI: 10.7632 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 121 | 1.1e-37 | 11 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknratksgyWkatgk 88 lppGfrFhPtdeelvv+yL++kv +++l++ vi+ v d+ +++PwdLp a+e e yfFs r+ ++ +g r++r + sgyWk+tgk Pavir.2NG424500.1.p 11 LPPGFRFHPTDEELVVQYLRRKVLARPLPA-AVIPVVhDVARLDPWDLPG---ASEGEGYFFSLRRAPATgRGGRRRR-AGSGYWKTTGK 95 79****************************.8899998***********3...3566889999988766525666666.599******** PP NAM 89 dkevlsk....kgelvglkktLvfykg.rapkgektdWvmheyrl 128 +++v+ + ++ lvg+k+ L+f++ ++++++t Wvmheyrl Pavir.2NG424500.1.p 96 ETPVFLHyggrRQLLVGVKTALTFHRSePSSSSSRTGWVMHEYRL 140 *****9987656666**********772456678*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.89E-45 | 8 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.299 | 11 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-24 | 12 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MERPAQAPRQ LPPGFRFHPT DEELVVQYLR RKVLARPLPA AVIPVVHDVA RLDPWDLPGA 60 SEGEGYFFSL RRAPATGRGG RRRRAGSGYW KTTGKETPVF LHYGGRRQLL VGVKTALTFH 120 RSEPSSSSSR TGWVMHEYRL AVPGDLAMAE QRKNANHGRV AEPGEWVVCR VSLKNRPRSR 180 PNRDGDGKTP GNRTSIAQGA APLQHREGDG RQPPSLLMSP QPSSSSCVTG VTDISDQDEV 240 SSISVRDAPA DSQREA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-28 | 11 | 174 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-28 | 11 | 174 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-28 | 11 | 174 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-28 | 11 | 174 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-28 | 11 | 174 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 5e-28 | 11 | 174 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 5e-28 | 11 | 174 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 5e-28 | 11 | 174 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 5e-28 | 11 | 174 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 5e-28 | 11 | 174 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 5e-28 | 11 | 174 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 5e-28 | 11 | 174 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 6e-28 | 11 | 174 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 6e-28 | 11 | 174 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2NG424500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT062533 | 1e-136 | BT062533.1 Zea mays full-length cDNA clone ZM_BFb0310M02 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025800656.1 | 1e-141 | NAC domain-containing protein 83-like | ||||
TrEMBL | A0A2T7EUG8 | 1e-140 | A0A2T7EUG8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J11699.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12805 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.1 | 3e-42 | NAC domain containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2NG424500.1.p |