PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2NG397500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | Dof | ||||||||
Protein Properties | Length: 257aa MW: 26454.5 Da PI: 8.582 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.2 | 7.3e-38 | 41 | 98 | 5 | 62 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +cprC+s++tkfCyynny++sqPr+fC++CrryWtkGG+lrnvPvGgg+rk+ +ss Pavir.2NG397500.1.p 41 GDPCPRCESRDTKFCYYNNYNTSQPRHFCRSCRRYWTKGGSLRNVPVGGGTRKSSSSS 98 568**************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50884 | 28.63 | 42 | 96 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.9E-32 | 43 | 96 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 8.0E-19 | 44 | 86 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 44 | 80 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MQEPGRRPAP PFAGVDLRRP KGYPPAPTAA EAEDPAPAPA GDPCPRCESR DTKFCYYNNY 60 NTSQPRHFCR SCRRYWTKGG SLRNVPVGGG TRKSSSSSSP VPPSPAAAPR STKRSKESKR 120 RRVAPAPDPA PGTDAFAAAI TGVANTAPTP APETVAAGEK PAAPVPAATV AAKEKPAATV 180 AATEMPTAPP AAVSGFTDTS TAPGVRLADV GSDADGGKEP LPDPNHFEWP SGCDLGPYWG 240 TGVFADTDPA LFLNLP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 118 | 122 | KRRRV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.2209 | 1e-171 | callus |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00672 | SELEX | Transfer from GRMZM2G009406 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2NG397500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT087500 | 2e-93 | BT087500.1 Zea mays full-length cDNA clone ZM_BFb0096C05 mRNA, complete cds. | |||
GenBank | EU966429 | 2e-93 | EU966429.1 Zea mays clone 294453 mRNA sequence. | |||
GenBank | JX428529 | 2e-93 | JX428529.1 Zea mays subsp. mays clone pUT3129 DOF16 C2C2-DOF type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957110.1 | 1e-108 | dof zinc finger protein MNB1A | ||||
Refseq | XP_025802654.1 | 1e-108 | dof zinc finger protein MNB1A-like | ||||
TrEMBL | A0A1E5V289 | 1e-118 | A0A1E5V289_9POAL; Dof zinc finger protein MNB1A | ||||
STRING | Pavir.Ba01771.1.p | 1e-177 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 1e-22 | DOF zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2NG397500.1.p |