PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG362800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ZF-HD
Protein Properties Length: 276aa    MW: 28818.3 Da    PI: 7.6969
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG362800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer97.21.3e-3060110556
          ZF-HD_dimer   5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 
                          rY+eClkNhA+ +GghavDGCgEfm++ geegt +al+CaAC CHRnFHR+ 
  Pavir.2NG362800.1.p  60 RYRECLKNHAVGIGGHAVDGCGEFMAA-GEEGTLDALRCAACSCHRNFHRKG 110
                          8*************************9.999*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257747.0E-2360113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.5E-2860110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.3E-2860109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.24361110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.33E-20203273IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.3E-33203274IPR009057Homeodomain-like
TIGRFAMsTIGR015652.7E-26212268IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MDFDDQDDGD EEMAPMPVSS SYETPPLAAG FGGGAAQPKP PGEPVPLAKA PGGHGGGGGR  60
YRECLKNHAV GIGGHAVDGC GEFMAAGEEG TLDALRCAAC SCHRNFHRKG SPTSEGSPAA  120
LVAYGAAPHH QFPPYYRTPA GYFPHHQPLH MAAAAGHAPR PLALPSTSHS GRDDGDDLSG  180
MPGPMSAMLP LGGMSLGGAG PSVSGGSGSA GKKRFRTKFT QEQKDRMLAF AERVGWRLQK  240
HDEAAVQQFC DEVGVKRHVL KVWMHNNKHT LGKKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-292132701875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG362800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126171e-102CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957068.11e-139zinc-finger homeodomain protein 1
SwissprotA2Z2591e-129ZHD1_ORYSI; Zinc-finger homeodomain protein 1
TrEMBLA0A1E5WDK31e-141A0A1E5WDK3_9POAL; Zinc-finger homeodomain protein 1
STRINGPavir.Ba02099.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39503269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-60homeobox protein 22