PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2NG353900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 356aa MW: 38264.3 Da PI: 9.8813 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 43.9 | 5.1e-14 | 276 | 326 | 5 | 55 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++ N++L + e+ ++ Pavir.2NG353900.1.p 276 RRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKELNQELERKQAEIMEM 326 79*************************************998777666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.1E-11 | 272 | 337 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.806 | 274 | 325 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 1.06E-23 | 276 | 328 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.9E-14 | 276 | 325 | No hit | No description |
SuperFamily | SSF57959 | 2.81E-10 | 276 | 324 | No hit | No description |
Pfam | PF00170 | 8.8E-12 | 276 | 327 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 279 | 294 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MEFMNGGSSK QRRPAREEGA PLPRQGSVYS LTFDEFQSAL GRAAAGGGGG TGKDFGSMNM 60 DELLRNIWNA EETQAMASAS GAGVPPTMLQ RQGSSLTLPR TLSAKTVDEV WRNLVRDEPP 120 QGADGNGQEQ AHRQSTLGEM TLEEFLVRAG VVRENPAPAP APPPMLPPRP VPVAPTSSAL 180 FGNFQGADDA ATAAALGFAP VRMGDLALGN GLMPPRATGG MGGSAAMAVQ TAVNQIDSGG 240 KGYSDLSSPT EPLPYSFEGM IRGRRNGAGV EKVVERRQRR MIKNRESAAR SRARKQAYTM 300 ELEAEVQKLK ELNQELERKQ AEIMEMQKNE VPEMLKDPFG RKKRACLRRT LTGPW* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves and embryos. {ECO:0000269|PubMed:10611387}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269|PubMed:10611387}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2NG353900.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA). {ECO:0000269|PubMed:10611387}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025802824.1 | 0.0 | bZIP transcription factor TRAB1-like | ||||
Swissprot | Q6ZDF3 | 1e-119 | TRAB1_ORYSJ; bZIP transcription factor TRAB1 | ||||
TrEMBL | A0A2S3H026 | 0.0 | A0A2S3H026_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7ET33 | 0.0 | A0A2T7ET33_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba02029.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP706 | 38 | 147 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19290.1 | 2e-42 | ABRE binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2NG353900.1.p |
Publications ? help Back to Top | |||
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