PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG323700.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 452aa    MW: 45761.4 Da    PI: 7.2181
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG323700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.84.4e-32257310255
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Pavir.2NG323700.2.p 257 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 310
                          9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.51E-15254311IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-28255311IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-23257310IPR006447Myb domain, plants
PfamPF002498.3E-7258309IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MEASSAASPD LSLHISLPSS APRSGPSGGR ATVGGAGGGG GAGGDPWRRL NGSTASTELS  60
LSPPAEQEHA DALPWRHSPS SAAGAPSAAT TSAGAALMPT MPMLQPLEGG GGGGGASAAA  120
PIRGIPIYNG PGGFPFLPPA AGGDGGHHQK LGFYGSYHPA TWPSSLGSTS PSPGAPPAPL  180
DPASAFLSPA AHHHHRMLSA SGRLNGMLSE TLLGYGGGGL GGIGGHHHHH HLHGAQPFGL  240
GSRFMPKLPA KRSMRAPRMR WTSTLHARFV HAVELLGGHE RATPKSVLEL MDVKDLTLAH  300
VKSHLQMYRT VKSTDKPAAS SGPNDGGSGD EDFPGAGQAA SGGDNMCGGA RPFGEHRSTS  360
EGAASSVGGG DMDQSSAGNT STTRWSNSSR DPWLSSNSCN MDAHRLAGLS SPIENAEPCR  420
SSSSQVSNHE LSSPSLEFTL GRPDWQGADH D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-16258312357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-16258312357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-16258312357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-16258312357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.92491e-83callus
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers. {ECO:0000269|PubMed:18594992}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG323700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9253980.0EU925398.1 Zea mays milkweed pod1 (mwp1) mRNA, complete cds.
GenBankEU9546670.0EU954667.1 Zea mays clone 1476543 myb-like DNA-binding domain, SHAQKYF class family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804688.10.0probable transcription factor RL9
SwissprotQ0J2351e-163ROLL9_ORYSJ; Probable transcription factor RL9
TrEMBLA0A1E5UP770.0A0A1E5UP77_9POAL; Putative transcription factor RL9
TrEMBLA0A2S3GZH90.0A0A2S3GZH9_9POAL; Uncharacterized protein
STRINGPavir.J41082.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.12e-53G2-like family protein