PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG316000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ZF-HD
Protein Properties Length: 362aa    MW: 37201.8 Da    PI: 8.1774
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG316000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer108.53.9e-343589558
          ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
                          Y+eClkNhAaslGghavDGCgEfmps+g++ +++++lkCaACgCHRnFHRr ve
  Pavir.2NG316000.1.p 35 LYRECLKNHAASLGGHAVDGCGEFMPSPGANpTDPTSLKCAACGCHRNFHRRAVE 89
                         7***************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.0E-283588IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-223686IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.2783687IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.4E-313687IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466896.57E-16204271IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-28205272IPR009057Homeodomain-like
TIGRFAMsTIGR015653.9E-23213269IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEAMDVKYKP FMFPNGAAVK KVKPAAVAPA AGEPLYRECL KNHAASLGGH AVDGCGEFMP  60
SPGANPTDPT SLKCAACGCH RNFHRRAVEG SPPPPAPLAL PVLPSVLHGQ PHRGGEETPD  120
DRLPGAVDDS DSDSDGSEYD EERSVSPPPP PHHVPAPVAQ QPPPPPYFPS GPHMLLSLGS  180
GAPGAAVAAA AQRLPPAQLT PSSAPPPGAA MPRKRFRTKF TAEQKQRMQE LSERLGWRLQ  240
KRDEAIVDEW CRDIGVGKGV FKVWMHNNKH NFLGGHSARR SASSAPAGPG AGAAPLHAPI  300
ANAGAAAPSF NTSAITPPPP VLTSSPPSAS GFNINGAASS APTATAGHPD NVTGASSPQS  360
A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A2e-212132711775ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.33510.0callus
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG316000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0632440.0BT063244.1 Zea mays full-length cDNA clone ZM_BFc0042E24 mRNA, complete cds.
GenBankEU9637460.0EU963746.1 Zea mays clone 272337 ZF-HD homeobox protein mRNA, complete cds.
GenBankJX4285110.0JX428511.1 Zea mays subsp. mays clone pUT3109 ZHD2 ZF-HD type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698877.11e-170zinc-finger homeodomain protein 9
SwissprotQ6ER211e-100ZHD9_ORYSJ; Zinc-finger homeodomain protein 9
TrEMBLA0A3L6T8181e-175A0A3L6T818_PANMI; Zinc-finger homeodomain protein 9-like
STRINGPavir.J22492.1.p1e-176(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.14e-26zinc finger homeodomain 1