PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG313000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 318aa    MW: 34314.8 Da    PI: 6.9343
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG313000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM142.62.2e-44331721128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrF+Ptdeel+++yL++k+++  +    +++evd+y++ePwdL  +  ++    yfF++r+ k ++g r+nrat++gyWk+tgkdk
  Pavir.2NG313000.1.p  33 LPPGFRFRPTDEELLTHYLAPKAADAGFAP-AAVREVDLYRAEPWDLLPAGGGGGGGGYFFCRRSVKFPSGLRTNRATRAGYWKSTGKDK 121
                          79*************************888.78**************53444556688******************************** PP

                  NAM  91 evlsk.............kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           vl++             +ge  g++ktLvfy+grap+gekt+Wvmheyrl
  Pavir.2NG313000.1.p 122 VVLRQhggggggigigsgHGEPLGMRKTLVFYRGRAPTGEKTNWVMHEYRL 172
                          ****988887777777766667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-5229200IPR003441NAC domain
PROSITE profilePS5100550.47433200IPR003441NAC domain
PfamPF023655.6E-2834172IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MYGHVRCLTM SMLHPACVTM SVRFRTGGGD GRLPPGFRFR PTDEELLTHY LAPKAADAGF  60
APAAVREVDL YRAEPWDLLP AGGGGGGGGY FFCRRSVKFP SGLRTNRATR AGYWKSTGKD  120
KVVLRQHGGG GGGIGIGSGH GEPLGMRKTL VFYRGRAPTG EKTNWVMHEY RLVQGHGCYT  180
SPLLAAGTQS EWVICRMFMR KPPGETSLLE EETVLRPPPH LRPSIDSCNG GETPAATNHF  240
PGALAVAPAD HQHESACQSV LQLNHEELLM NYSVSDYASA AAASAAENCY DELCSGSIDD  300
LLPQLLDYEG LPFLQDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-413320117166NO APICAL MERISTEM PROTEIN
1ut4_B4e-413320117166NO APICAL MERISTEM PROTEIN
1ut7_A4e-413320117166NO APICAL MERISTEM PROTEIN
1ut7_B4e-413320117166NO APICAL MERISTEM PROTEIN
3swm_A4e-413320120169NAC domain-containing protein 19
3swm_B4e-413320120169NAC domain-containing protein 19
3swm_C4e-413320120169NAC domain-containing protein 19
3swm_D4e-413320120169NAC domain-containing protein 19
3swp_A4e-413320120169NAC domain-containing protein 19
3swp_B4e-413320120169NAC domain-containing protein 19
3swp_C4e-413320120169NAC domain-containing protein 19
3swp_D4e-413320120169NAC domain-containing protein 19
4dul_A4e-413320117166NAC domain-containing protein 19
4dul_B4e-413320117166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG313000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801567.11e-142NAC domain-containing protein 92-like
SwissprotQ9FLJ22e-55NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A2T7ES831e-136A0A2T7ES83_9POAL; Uncharacterized protein
TrEMBLA0A2T8KQF51e-136A0A2T8KQF5_9POAL; Uncharacterized protein
STRINGPavir.Ba02230.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP153521618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.12e-52NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]