PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2NG238700.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 581aa MW: 63936.4 Da PI: 7.0084

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2NG238700.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.00068	66	87	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F ++ n++rH r+H Pavir.2NG238700.2.p 66 KCTKCSREFCSSINFRRHTRVH 87 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.702	65	87	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	67	87	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 581 aa Download sequence Send to blast
MSASWKSSHV TTKDGAETAR DIISTSSQIQ SMKVPDAVAA IAQAAAKAND LPGWPLFSPP 60 KVQLDKCTKC SREFCSSINF RRHTRVHRRT LKVDKDFPKN RDHLAAFWNK LTVDEASTVL 120 SLSNVVVEGV SGSSILTTLS SWMCKPGYAS LPMAYARAGS ELLDLIQTKI SMQLPVSSNE 180 LFSVLDEASE KTFLCTNTAA CIQKFLFDGE ANKIATELKN VVACASYMLE QKLVEAWCAD 240 KAAEALRCQK LLVEEEEAAQ KRQAELMERK RMKKLRQKEQ RLKDLKDENV VIQLPEIMDD 300 TTCSPGIQSF KAISDPDLNE QEKSQYIQFP APVTSETGNG FNVDLSVEDV SCDSAPEMDK 360 GVVLRKQVIS RHHLGRTEKL AENSFVSGSA VVSKQAALAR PSNYRDANVC SSPNRNKTWA 420 RKVPAEIGNQ CPKHGLDVDD EHNMALSKNS RVLIGSICVA IEDGNEHLKD SRSKNDPVPP 480 CSKIVKHASV VLQPVTHKEN RNEGISNSDG NSAPADENPS CFSSMTDESS HSTCCSADFA 540 EGEHLRRTMF SSKEATSFLS QRWKEAIAAD HVKLVLCHDK *

Sequence ? help Back to Top

Protein Sequence Length: 581 aa Download sequence Send to blast

MSASWKSSHV TTKDGAETAR DIISTSSQIQ SMKVPDAVAA IAQAAAKAND LPGWPLFSPP  60
KVQLDKCTKC SREFCSSINF RRHTRVHRRT LKVDKDFPKN RDHLAAFWNK LTVDEASTVL  120
SLSNVVVEGV SGSSILTTLS SWMCKPGYAS LPMAYARAGS ELLDLIQTKI SMQLPVSSNE  180
LFSVLDEASE KTFLCTNTAA CIQKFLFDGE ANKIATELKN VVACASYMLE QKLVEAWCAD  240
KAAEALRCQK LLVEEEEAAQ KRQAELMERK RMKKLRQKEQ RLKDLKDENV VIQLPEIMDD  300
TTCSPGIQSF KAISDPDLNE QEKSQYIQFP APVTSETGNG FNVDLSVEDV SCDSAPEMDK  360
GVVLRKQVIS RHHLGRTEKL AENSFVSGSA VVSKQAALAR PSNYRDANVC SSPNRNKTWA  420
RKVPAEIGNQ CPKHGLDVDD EHNMALSKNS RVLIGSICVA IEDGNEHLKD SRSKNDPVPP  480
CSKIVKHASV VLQPVTHKEN RNEGISNSDG NSAPADENPS CFSSMTDESS HSTCCSADFA  540
EGEHLRRTMF SSKEATSFLS QRWKEAIAAD HVKLVLCHDK *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	267	274	ERKRMKKL
2	272	282	KKLRQKEQRLK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.7128	0.0	callus\| leaf\| root\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2NG238700.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025799782.1	0.0	uncharacterized protein LOC112879646 isoform X4
TrEMBL	A0A2T7EP99	0.0	A0A2T7EP99_9POAL; Uncharacterized protein
STRING	Pavir.Bb01437.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	6e-87	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Pavir.2NG238700.2.p