PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG168500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TCP
Protein Properties Length: 311aa    MW: 32423.2 Da    PI: 10.5924
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG168500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP28.16.7e-09721031243
                  TCP  12 hTkvggRdRRvRlsaecaarfFdLqdeLGfdk 43 
                           Tkv+g +RR+R+ a+ca r+  L +eL +++
  Pavir.2NG168500.1.p  72 QTKVEGHGRRIRMAAPCAVRVASLSRELQHKS 103
                          59****************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEPRAPGRGE ADPEPLYLAA EAGGNGTAAA FPVAVDAMRS VEAGGSGMTK PEPVPVEFLG  60
GGLQLANPWH GQTKVEGHGR RIRMAAPCAV RVASLSRELQ HKSCAALPTH LLAWPPLGAT  120
RRVAGPSTPG RRRPRRPPCA ATTSAWPLSL HAAKSRRPRA PARAPLAVHR PRRAPEGRKP  180
ARHRRPCLYP VRAARSGSGE SWRPSRSRAT ATEPPATRIS DAEEVGGGAE EEDGDERQEG  240
GAPRDRGRDV QLRCHQADPH GGTEHYGVRM AGGDAADTTA VAGTRGGERG GGGGSTDGLG  300
GGEKDSLCCR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG168500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPavir.J02457.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.14e-07TCP family protein