PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG147500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 349aa    MW: 36775.5 Da    PI: 6.3213
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG147500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.61.1e-32202259259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK+vk+s +prsYYrCt a+C vkk+vers++dp++v++tYeg+H+h+
  Pavir.2NG147500.1.p 202 EDGYRWRKYGQKPVKNSSYPRSYYRCTAARCGVKKRVERSHQDPSTVITTYEGQHTHP 259
                          8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-34186261IPR003657WRKY domain
SuperFamilySSF1182907.19E-29193261IPR003657WRKY domain
PROSITE profilePS5081130.802196261IPR003657WRKY domain
SMARTSM007744.8E-37201260IPR003657WRKY domain
PfamPF031063.0E-26202259IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MSAGAGAGGH GGGLYGDPAA AADHFAAFDH DDFFFQRSPC AGEGGGGGGG GGGGGGGDGL  60
MTPYSSITDY LQGFLDPAGV GAHLDAPCRF GDDAVKQGME AVPVRLVRHD GQAGQPVTPN  120
SSVLSSSSCE AGGADEEPRR RCKAGRPEEE EEEEQEEEID ADEGSAADRN CKRSKDKKAR  180
GEKKPREPRV AFMTKSEVDH LEDGYRWRKY GQKPVKNSSY PRSYYRCTAA RCGVKKRVER  240
SHQDPSTVIT TYEGQHTHPS PASVLIRCGG GGGAYGAPPR LGFRPDLRAM ADDYAHAARM  300
TPSSLVTPVG GPLPPTSLIH ELRRSSSHLA AYGGVLDFIP SEMSNEHA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-25192262878Probable WRKY transcription factor 4
2lex_A1e-25192262878Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171177KRSKDKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG147500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586071e-140KU058607.1 UNVERIFIED: Panicum miliaceum WRKY7-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805394.11e-153WRKY transcription factor 28-like
TrEMBLA0A3L6RBY01e-156A0A3L6RBY0_PANMI; Putative WRKY transcription factor 57
STRINGPavir.J37620.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.12e-43WRKY DNA-binding protein 28