PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG147200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 328aa    MW: 35279.3 Da    PI: 6.1149
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG147200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.31e-25161218258
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                           D ++WrKYGqK++kgs++pr+YY+C+s   C+++k vers   p v+++tY  eH h
  Pavir.2NG147200.1.p 161 TDLWAWRKYGQKPIKGSPHPRGYYKCSSLkACMARKLVERSPAKPGVLVVTYIAEHCH 218
                          699************************9989*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081128.082155221IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-25156221IPR003657WRKY domain
SuperFamilySSF1182909.29E-23158221IPR003657WRKY domain
SMARTSM007741.6E-30160220IPR003657WRKY domain
PfamPF031063.4E-21162218IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MECSNNDWDL QAVVRSCGTG TAACNGSGGS SEAPPPEEEA RRRIHVGRVA AAAPEFLVGR  60
PVRPAAALRD LDYLGLDHEL PRAPFSITPS PSSERGAPLD HEVLISFPSA STSGQGQQLL  120
QPRKQPGRKP GVRTPRPKRS KKSQLKKVVC EVPVADGGVS TDLWAWRKYG QKPIKGSPHP  180
RGYYKCSSLK ACMARKLVER SPAKPGVLVV TYIAEHCHVV PTMLNALAGT TRHRPASPDD  240
GGRQASHGAS DEASGSGRRE EDSADASSMT ADGGGAETAD DENEPWQVDM AALDEYPLDD  300
FLKPFDDDFV DRFFEDDDGV LERRVSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-16142222280Disease resistance protein RRS1
5w3x_D2e-16142222280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG147200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1114165e-91AK111416.1 Oryza sativa Japonica Group cDNA clone:002-182-G03, full insert sequence.
GenBankAY8706015e-91AY870601.1 Oryza sativa (japonica cultivar-group) WRKY12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809273.10.0WRKY transcription factor 22-like
TrEMBLA0A3L6SXR10.0A0A3L6SXR1_PANMI; WRKY transcription factor 22-like
STRINGPavir.J36501.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-38WRKY family protein