PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG122400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 274aa    MW: 30601.3 Da    PI: 6.108
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG122400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.34.2e-51191441128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeelv +yL+++++g++ ++  +i+evd+y+++Pw+Lp+++  +++ewyfF++rd+ky++g+r+nra+ +gyWkatg dk
  Pavir.2NG122400.1.p  19 LPPGFRFHPTDEELVAHYLCARAAGRSAPV-PIIAEVDLYRFDPWELPERALFGRREWYFFTPRDRKYPNGSRPNRAAGTGYWKATGADK 107
                          79*************************999.88***************87778999********************************** PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +v + +g++ g+kk Lvfy+g+ p+g kt+W+mheyrl
  Pavir.2NG122400.1.p 108 PVQH-GGRTLGIKKALVFYHGKPPRGIKTEWIMHEYRL 144
                          ***9.9******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.45E-6415170IPR003441NAC domain
PROSITE profilePS5100559.63919170IPR003441NAC domain
PfamPF023652.1E-2620144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MVTAAAATQR RDAEAELNLP PGFRFHPTDE ELVAHYLCAR AAGRSAPVPI IAEVDLYRFD  60
PWELPERALF GRREWYFFTP RDRKYPNGSR PNRAAGTGYW KATGADKPVQ HGGRTLGIKK  120
ALVFYHGKPP RGIKTEWIMH EYRLADAGGK KPGNGSLRLD DWVLCRLYNK KNEWEKMQQQ  180
KEKAMESEAS LSHSHSHSDT RTPESEIDDD TFPGLGSLPE FDGMGPAPAG AVLPKEEVQD  240
FGNLGGDDWL AGINLDYLQV PGDADFFNNM PLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-9591765174Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf blades. {ECO:0000269|PubMed:10660065}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG122400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses (PubMed:18813954, PubMed:20632034). Induced by dehydration and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0417450.0BT041745.2 Zea mays full-length cDNA clone ZM_BFb0043E11 mRNA, complete cds.
GenBankDQ2442800.0DQ244280.1 Zea mays clone 4143 mRNA sequence.
GenBankHQ8586770.0HQ858677.1 Zea mays clone UT1133 NAC transcription factor mRNA, partial cds.
GenBankKP2835360.0KP283536.1 Zea mays NAC protein (Zma000584) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804128.11e-180NAC domain-containing protein 67-like
SwissprotQ7EZT11e-116NAC67_ORYSJ; NAC domain-containing protein 67
TrEMBLA0A2S3GWW51e-179A0A2S3GWW5_9POAL; Uncharacterized protein
TrEMBLA0A2T7EMR01e-179A0A2T7EMR0_9POAL; Uncharacterized protein
STRINGPavir.Ba03301.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44143071
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.13e-81NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  3. Ghosh T,Rai M,Tyagi W,Challam C
    Seedling stage low temperature response in tolerant and susceptible rice genotypes suggests role of relative water content and members of OsSNAC gene family.
    Plant Signal Behav, 2016. 11(5): p. e1138192
    [PMID:26829663]
  4. Rahman H,Ramanathan V,Nallathambi J,Duraialagaraja S,Muthurajan R
    Over-expression of a NAC 67 transcription factor from finger millet (Eleusine coracana L.) confers tolerance against salinity and drought stress in rice.
    BMC Biotechnol., 2016. 16 Suppl 1: p. 35
    [PMID:27213684]