PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG054200.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CPP
Protein Properties Length: 577aa    MW: 62417.8 Da    PI: 6.5924
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG054200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.83.4e-16462500240
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                           +k+C+CkkskClk+YCeCfaag++Cse C+C++C Nk 
  Pavir.2NG054200.2.p 462 ACKRCSCKKSKCLKLYCECFAAGVYCSEPCSCQGCLNKP 500
                          589**********************************96 PP
2TCR31.43.7e-10547568122
                  TCR   1 kekkgCnCkkskClkkYCeCfa 22 
                          ++k+gCnCkks+ClkkYCeC++
  Pavir.2NG054200.2.p 547 RHKRGCNCKKSSCLKKYCECYQ 568
                          589******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.8E-17461502IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163429.969462576IPR005172CRC domain
PfamPF036386.1E-12464499IPR005172CRC domain
SMARTSM011140.0092547576IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.5E-6549568IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009934Biological Processregulation of meristem structural organization
GO:0048444Biological Processfloral organ morphogenesis
GO:0051302Biological Processregulation of cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MDTPDRAAAQ PPPASRAEDS PVFSFINNLS PIEPLKSAYN ASSIQGYQSI NITSVSSIFT  60
SPHDNAHKET RLAKSSLGEI SESEVCAGGS KTNKPAKSSN AVRLFARAST VTRETHTVTC  120
SDVADPPTEP CDLAQPAQFD NGSPDHNTTP CHGVRSDLKQ EKCRKLDVVQ TVKNTVEKRK  180
CLFSTEIQLL DGGQPVNDSD DVLGCEWSDL ISTTSGELLA FDSTMDDHHR GMHLAAKNAE  240
SCGYLLSKLT GGGEISDRAH PSASGQVYYQ EIVMGEDQAE NPQIFQDGQQ TISTEEIQDN  300
IYEANGCIPL DYKVESQQRG IRRRCLVFEA AGFSNTVVQK ETVESLSVST CKGKSHVQTQ  360
PRGLRGIGLH LNALALTPKG KMASQDPMAS GLHPSSGSEK DVHGKFLSAG EKFPDSGGEL  420
LEFPMDDCSA GGFPVNDHVS SQSVSPQKKR RKTDNNGDDG EACKRCSCKK SKCLKLYCEC  480
FAAGVYCSEP CSCQGCLNKP IHEEIVLSTR KQIEFRNPLA FAPKVIRMSD AGPETGEDPN  540
STPASARHKR GCNCKKSSCL KKYCECYQLT LNSLKK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1447451KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.139120.0leaf| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG054200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799594.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A2S3GWC50.0A0A2S3GWC5_9POAL; Uncharacterized protein
STRINGPavir.J10831.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.13e-59Tesmin/TSO1-like CXC domain-containing protein