PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2NG043900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | YABBY | ||||||||
Protein Properties | Length: 169aa MW: 19007.4 Da PI: 9.0352 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 227.7 | 3e-70 | 2 | 158 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekees 91 +++++se+vCyv+Cn+Cntil+v+vP+t+++++vtv+CGhCt+ ls++l+ ++q++ + ++ ++++++++++ n +e + Pavir.2NG043900.1.p 2 STQFASEHVCYVNCNYCNTILVVNVPNTCSYNIVTVKCGHCTMALSMDLSPFHQARIVPDN-------QVVQNRGFHQYNNFGSYEPASR 84 67899*****************************************************997.......7999999988665555555556 PP YABBY 92 astsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + +++s++++s+n+ + p +rPPekrqrvPsaynrfikeeiqrik+snP+ishreafsaaaknWah+P++hfgl Pavir.2NG043900.1.p 85 NLRNQSMYQMSNNQPQVQP-----MRPPEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGL 158 6677788899999988877.....7****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.0E-62 | 6 | 158 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.31E-8 | 100 | 152 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 5.7E-6 | 104 | 152 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MSTQFASEHV CYVNCNYCNT ILVVNVPNTC SYNIVTVKCG HCTMALSMDL SPFHQARIVP 60 DNQVVQNRGF HQYNNFGSYE PASRNLRNQS MYQMSNNQPQ VQPMRPPEKR QRVPSAYNRF 120 IKEEIQRIKT SNPEISHREA FSAAAKNWAH LPRLHFGLSV ADGGGGSS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.10696 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detected throughout panicle development with the strongest expression in immature panicles, and weakest in mature panicles. Abundantly found in the stamen and carpel primordia of young spikelets. {ECO:0000269|PubMed:15604733, ECO:0000269|PubMed:17216490}. | |||||
Uniprot | TISSUE SPECIFICITY: Preferentially expressed in flowers. Expressed in leaf blades and leaf sheaths. Does not show polar expression pattern. {ECO:0000269|PubMed:15604733}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in floral meristem development and maintenance of stamens, rather than in determining polarity in floral organs. {ECO:0000269|PubMed:15604733, ECO:0000269|PubMed:17369428}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2NG043900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU963149 | 1e-164 | EU963149.1 Zea mays clone 258350 protein YABBY mRNA, complete cds. | |||
GenBank | EU970658 | 1e-164 | EU970658.1 Zea mays clone 348580 protein YABBY mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025802461.1 | 1e-120 | protein YABBY 1-like | ||||
Swissprot | Q7XIM7 | 5e-95 | YAB1_ORYSJ; Protein YABBY 1 | ||||
TrEMBL | A0A2S3GVT1 | 1e-119 | A0A2S3GVT1_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7EKU4 | 1e-119 | A0A2T7EKU4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba03779.1.p | 1e-124 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1394 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 2e-56 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2NG043900.1.p |