PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG584700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 382aa    MW: 40702 Da    PI: 7.0621
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG584700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.44.2e-51111381128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+ +yL++++++ ++++  +i++vdiyk++Pw+Lp+k+  ++ e+yfFs+rd+ky++g r+nra+ sgyWkatg+dk
  Pavir.2KG584700.1.p  11 LPPGFRFHPTDEELILHYLRNRAASLPCPV-PIIADVDIYKLDPWELPSKAVYGDGEYYFFSPRDRKYPNGIRPNRAAGSGYWKATGTDK 99 
                          79****************************.88***************76667899********************************** PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++++ +ge vg+kk Lvfykgr p+g+kt+W+mheyrl
  Pavir.2KG584700.1.p 100 PIHDSaTGESVGVKKALVFYKGRPPRGTKTNWIMHEYRL 138
                          ***9988999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-622185IPR003441NAC domain
PROSITE profilePS5100559.31511185IPR003441NAC domain
PfamPF023652.2E-2612138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MMSSAAATSQ LPPGFRFHPT DEELILHYLR NRAASLPCPV PIIADVDIYK LDPWELPSKA  60
VYGDGEYYFF SPRDRKYPNG IRPNRAAGSG YWKATGTDKP IHDSATGESV GVKKALVFYK  120
GRPPRGTKTN WIMHEYRLAA AAAAPLAAAA AAAPLAAAYR PPPSKFRNVT TMRLDDWVLC  180
RIYNKSGQPS PMVPPLADYD HLDNDDPASS GGFDDICSFD APTTSSGATS TTASSSAFLH  240
QQPPPAAALL PRLPKIPSFP ELLDEYAFAH IFDTAAGPVE QDPLAVHPSL NQLPAVGDCA  300
HSDLTTIYSP PPAAGGKRKA TSMSPDECTG TITAAAGNHH HPPGKRLNGS WCLDAPQPAI  360
ALLPATSSVL GGLNHHMLPH F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-6831887171Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG584700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0679141e-179BT067914.2 Zea mays full-length cDNA clone ZM_BFc0188L19 mRNA, complete cds.
GenBankEU9713991e-179EU971399.1 Zea mays clone 363807 NAC domain transcription factor mRNA, complete cds.
GenBankKP2979321e-179KP297932.1 Zea mays Zma1158 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800259.10.0NAC domain-containing protein 48-like
TrEMBLA0A3L6TBL40.0A0A3L6TBL4_PANMI; NAC domain-containing protein 48-like
STRINGPavir.Bb03737.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-75NAC-like, activated by AP3/PI