PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG584100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 296aa    MW: 32690.2 Da    PI: 5.4459
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG584100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.41.7e-54101381128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtd e+vv+yL++k+ + ++++  vi++vd++k+ePwdLp k+k +ekewyfF+++d+ky+tg r+nrat++gyWkatgkdk
  Pavir.2KG584100.1.p  10 LPPGFRFHPTDAEVVVDYLTPKALDGSFSC-VVIADVDLNKTEPWDLPGKAKMGEKEWYFFCHKDRKYPTGMRTNRATARGYWKATGKDK 98 
                          79**************************99.78***************99999************************************* PP

                  NAM  91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          e+++   +g lvg+kktLvfy+grap+gekt Wvmheyrl
  Pavir.2KG584100.1.p  99 EIYRGrgRGVLVGMKKTLVFYTGRAPRGEKTPWVMHEYRL 138
                          ***98667778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-636162IPR003441NAC domain
PROSITE profilePS5100557.80210162IPR003441NAC domain
PfamPF023651.2E-2711138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MSSSEPRLVL PPGFRFHPTD AEVVVDYLTP KALDGSFSCV VIADVDLNKT EPWDLPGKAK  60
MGEKEWYFFC HKDRKYPTGM RTNRATARGY WKATGKDKEI YRGRGRGVLV GMKKTLVFYT  120
GRAPRGEKTP WVMHEYRLDG KLPPNLPRSA KDEWAVCRVF NKDYLAAKPA QMAPEPTSIP  180
LDLDDIFGVP PLEDSEYAVD DLLLDFKGAA AGMGQVKAEQ QQGQGPSYFS LPAATNPHGA  240
AEQAIRAHCK PEAPAPLPSP STQLSGGDMS FPEADDLLLL DDEGLFMDYS NMWNC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-52716814171NO APICAL MERISTEM PROTEIN
1ut4_B3e-52716814171NO APICAL MERISTEM PROTEIN
1ut7_A3e-52716814171NO APICAL MERISTEM PROTEIN
1ut7_B3e-52716814171NO APICAL MERISTEM PROTEIN
3swm_A3e-52716817174NAC domain-containing protein 19
3swm_B3e-52716817174NAC domain-containing protein 19
3swm_C3e-52716817174NAC domain-containing protein 19
3swm_D3e-52716817174NAC domain-containing protein 19
3swp_A3e-52716817174NAC domain-containing protein 19
3swp_B3e-52716817174NAC domain-containing protein 19
3swp_C3e-52716817174NAC domain-containing protein 19
3swp_D3e-52716817174NAC domain-containing protein 19
4dul_A3e-52716814171NAC domain-containing protein 19
4dul_B3e-52716814171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.47781e-130callus
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG584100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9683091e-142EU968309.1 Zea mays clone 318661 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804669.11e-158NAC domain-containing protein 87-like
SwissprotQ9FK443e-79NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A2T7F0721e-157A0A2T7F072_9POAL; Uncharacterized protein
STRINGPavir.Bb03733.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.23e-82Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]