PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2KG563300.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 575aa MW: 60842.9 Da PI: 6.2065

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2KG563300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.2	1e-14	115	174	3	62
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 e kr r+ +NRe+A sRqRKk+++eeLe kvk+++a +L +++ + e a lk++ Pavir.2KG563300.1.p 115 EAKRRARLVRNRESAHLSRQRKKQYVEELEGKVKAMQATIADLSATISCVTAENAVLKQQ 174 78*************************************************999999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.5E-13	112	177	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.806	115	175	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.8E-13	115	175	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.2E-17	117	175	No hit	No description
SuperFamily	SSF57959	3.38E-13	117	175	No hit	No description
CDD	cd14704	5.54E-21	118	169	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 575 aa Download sequence Send to blast
MAEPTLLAPD PFGDISFPEF QAPADVDNFV FEDFDLEDLD LDVDFDLDPF ASDGLLAQPP 60 PLATSSSSAG SPEGGSSSSG AGGDGGLRNE ESSESFSRSA SGTGGSGKGK REDDEAKRRA 120 RLVRNRESAH LSRQRKKQYV EELEGKVKAM QATIADLSAT ISCVTAENAV LKQQLGGAAG 180 TAPPPPPPPP PLPMYPAVYP LPMPWMHPAY AMRGSQVPLV PIPRLKPQQP APATAEPPAK 240 KARKTKKVAS VSLLGLLCLV MLCGCLIPAV NRMYGSVDGG EGAAFGPSHH GRVLAVEGPR 300 DTVSDSIDPK LPQGTSETLP ALLYLPKNGK HVKINGNLVI KSIVASEKAS LQMSGYDGKS 360 PRNQGKEETS LAIPGYVAPL EAGDVMESTT GMKNKLMALA PADGNMYRED DGLLPQWFSE 420 AMSGPLPSSG MCTEVFQFDV SPSTAHANGI VPVYSNAMSN STQNFTENLP SAHPHTVKNR 480 RISYSEAIPL KGSTSNNTER LKTPPKNESF GSMKPVSSVV VSVLADPREA GEGNGEGRIS 540 SKSLSRIFVV VLIDSVKYVT YSCVLPFKNH SPHL*

Sequence ? help Back to Top

Protein Sequence Length: 575 aa Download sequence Send to blast

MAEPTLLAPD PFGDISFPEF QAPADVDNFV FEDFDLEDLD LDVDFDLDPF ASDGLLAQPP  60
PLATSSSSAG SPEGGSSSSG AGGDGGLRNE ESSESFSRSA SGTGGSGKGK REDDEAKRRA  120
RLVRNRESAH LSRQRKKQYV EELEGKVKAM QATIADLSAT ISCVTAENAV LKQQLGGAAG  180
TAPPPPPPPP PLPMYPAVYP LPMPWMHPAY AMRGSQVPLV PIPRLKPQQP APATAEPPAK  240
KARKTKKVAS VSLLGLLCLV MLCGCLIPAV NRMYGSVDGG EGAAFGPSHH GRVLAVEGPR  300
DTVSDSIDPK LPQGTSETLP ALLYLPKNGK HVKINGNLVI KSIVASEKAS LQMSGYDGKS  360
PRNQGKEETS LAIPGYVAPL EAGDVMESTT GMKNKLMALA PADGNMYRED DGLLPQWFSE  420
AMSGPLPSSG MCTEVFQFDV SPSTAHANGI VPVYSNAMSN STQNFTENLP SAHPHTVKNR  480
RISYSEAIPL KGSTSNNTER LKTPPKNESF GSMKPVSSVV VSVLADPREA GEGNGEGRIS  540
SKSLSRIFVV VLIDSVKYVT YSCVLPFKNH SPHL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.15856	0.0	callus\| leaf\| root\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269\|PubMed:22050533}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2KG563300.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000305\|PubMed:22050533}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025800125.1	0.0	bZIP transcription factor 60-like
Swissprot	Q8LIB3	0.0	BZP60_ORYSJ; bZIP transcription factor 60
TrEMBL	A0A2S3H4T7	0.0	A0A2S3H4T7_9POAL; Uncharacterized protein
TrEMBL	A0A2T7EZC2	0.0	A0A2T7EZC2_9POAL; Uncharacterized protein
STRING	Pavir.J09096.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11179	30	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40950.1	3e-71	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pavir.2KG563300.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Oono Y, et al. Analysis of ER stress in developing rice endosperm accumulating beta-amyloid peptide. Plant Biotechnol. J., 2010. 8(6): p. 691-718 [PMID:20331531] Hu J, et al. The Bphi008a gene interacts with the ethylene pathway and transcriptionally regulates MAPK genes in the response of rice to brown planthopper feeding. Plant Physiol., 2011. 156(2): p. 856-72 [PMID:21487048] Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response. Plant Cell Physiol., 2012. 53(1): p. 144-53 [PMID:22084314] Ohta M, et al. Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants. J. Exp. Bot., 2013. 64(18): p. 5429-41 [PMID:24153418] Cheng Q, et al. An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice. Plant Biol (Stuttg), 2015. 17(2): p. 419-29 [PMID:25255693]