PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG556300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 168aa    MW: 18936.6 Da    PI: 9.3137
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG556300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR172.21.2e-2224111289
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                          f+ +Y+  +GF+vrk+ ++ sk++g++t+  +vCs+eg+r ++ ++ +  +  raetrt+Cka++++++++  g++evt+++leHnH+l
  Pavir.2KG556300.1.p  24 FWVAYGGCTGFDVRKRCTNVSKMDGKVTSCIYVCSNEGHRPKKLTD-HVPKFFRAETRTNCKARMVITLDRgAGNYEVTNVVLEHNHPL 111
                          99***************************************99998.888999******************9***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-1824111IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MTEINRKIPQ VGLRFKDPDE GWLFWVAYGG CTGFDVRKRC TNVSKMDGKV TSCIYVCSNE  60
GHRPKKLTDH VPKFFRAETR TNCKARMVIT LDRGAGNYEV TNVVLEHNHP LHLPETFHLM  120
KSQRKISELQ AFEIETADDS GIRSKAAHEL ATHSGIRSKA AHELATR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG556300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0055141e-155AP005514.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0035A24.
GenBankAP0149581e-155AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688484.11e-89PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA3BT734e-82A3BT73_ORYSJ; Uncharacterized protein
STRINGSb04g038323.12e-81(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.26e-13FAR1 family protein