PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG541700.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 657aa    MW: 72341.4 Da    PI: 4.6124
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG541700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.71.5e-143175348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +W++eEd  l   ++q+G+++W+ Ia+ +   +t+ qc+ rw++yl
  Pavir.2KG541700.2.p 31 SWSAEEDNVLRAQIAQHGTDNWTIIAAQFK-DKTARQCRRRWYNYL 75
                         6****************************9.**************7 PP
2Myb_DNA-binding41.82.6e-1381124146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +g W+ eEd ll +a k+lG++ W+ Ia+ +  gRt++ +k+r+ +
  Pavir.2KG541700.2.p  81 KGGWSREEDMLLCEAQKLLGNR-WTEIAKVVS-GRTDNAVKNRFST 124
                          688*******************.*********.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.3692479IPR017930Myb domain
SMARTSM007173.1E-132877IPR001005SANT/Myb domain
SuperFamilySSF466891.5E-2628122IPR009057Homeodomain-like
CDDcd001672.00E-133175No hitNo description
Gene3DG3DSA:1.10.10.601.5E-193282IPR009057Homeodomain-like
PfamPF139212.9E-153292No hitNo description
SMARTSM007174.7E-1480128IPR001005SANT/Myb domain
PROSITE profilePS5129417.03980130IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-1983129IPR009057Homeodomain-like
CDDcd001674.01E-1084125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MATGPDLSSS SGAAAAAVPD AAAKKDRHIV SWSAEEDNVL RAQIAQHGTD NWTIIAAQFK  60
DKTARQCRRR WYNYLNSECK KGGWSREEDM LLCEAQKLLG NRWTEIAKVV SGRTDNAVKN  120
RFSTLCKRRA KDDEPFQENG TPCSNTNAKR VLTKTGCVTP GTAGSSLPMK QKSSDLKENI  180
VPNMRLFGQE KGTQQDARQP LATISSNNQQ NPNTVKSQNL IAPTIKTLLG PEQHCVKQEG  240
NFMKKDDPKV AILLQQADLL CSLATKINHE DTSQSMDEAW QQLQHHLVKT EDNGMSENSG  300
SGIASLLEEL DDLIVDPYES KEEDEEKSRE QNERQTDVGN EQCSGPSQAS MEVTSNMAPD  360
EMIEDHTVGS CKEVSSLCRK MLSGSMEACP GAKITASENL SEVAEDRRLQ QVESTSPVLT  420
DFDDFIIDPY ENKEEDEQNL RELNGQIDVH NHQSYCPTQA TMEVTTEIAP DELMEACPVD  480
NCKEDNNLCR NVLSGSMEPS PGAEKAAYPN LSEVAEERKL QCMQSISTVP TNCQTKECGE  540
TSVPENLNEV AEDSRHQCVE FTSPAHTFLR AKAGAEAYAS PRIDVVAKDS KLSSMEFTSP  600
AHTVATFQPY ADDMPTPKFT ASERNFLLSV LELTSPGSRP ETSQQPSCKR ALLNSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-293212910107B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.86041e-148callus| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG541700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0634261e-124AK063426.1 Oryza sativa Japonica Group cDNA clone:001-115-D02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799287.10.0transcription factor MYB124 isoform X4
TrEMBLA0A2T7EYZ60.0A0A2T7EYZ6_9POAL; Uncharacterized protein
STRINGPavir.Bb03405.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14350.22e-84MYB family protein