PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2KG541700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 693aa MW: 76054.6 Da PI: 4.6585 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.6 | 1.6e-14 | 31 | 75 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +W++eEd l ++q+G+++W+ Ia+ + +t+ qc+ rw++yl Pavir.2KG541700.1.p 31 SWSAEEDNVLRAQIAQHGTDNWTIIAAQFK-DKTARQCRRRWYNYL 75 6****************************9.**************7 PP | |||||||
2 | Myb_DNA-binding | 41.7 | 2.8e-13 | 81 | 124 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g W+ eEd ll +a k+lG++ W+ Ia+ + gRt++ +k+r+ + Pavir.2KG541700.1.p 81 KGGWSREEDMLLCEAQKLLGNR-WTEIAKVVS-GRTDNAVKNRFST 124 688*******************.*********.**********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.369 | 24 | 79 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.61E-26 | 28 | 122 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-13 | 28 | 77 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.19E-13 | 31 | 75 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-19 | 32 | 82 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 3.1E-15 | 32 | 92 | No hit | No description |
SMART | SM00717 | 4.7E-14 | 80 | 128 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.039 | 80 | 130 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-19 | 83 | 129 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.35E-10 | 84 | 125 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 693 aa Download sequence Send to blast |
MATGPDLSSS SGAAAAAVPD AAAKKDRHIV SWSAEEDNVL RAQIAQHGTD NWTIIAAQFK 60 DKTARQCRRR WYNYLNSECK KGGWSREEDM LLCEAQKLLG NRWTEIAKVV SGRTDNAVKN 120 RFSTLCKRRA KDDEPFQENG TPCSNTNAKR VLTKTGCVTP GTAGSSLPMK QKSSDLKENI 180 VPNMRLFGQE KGTQQDARQP LATISSNNQQ NPNTVKSQNL IAPTIKTLLG PEQHCVKQEG 240 NFMKKDDPKV AILLQQADLL CSLATKINHE DTSQSMDEAW QQLQHHLVKT EDNGMSENSG 300 SGIASLLEEL DDLIVDPYES KEEDEEKSRE QNERQTDVGN EQCSGPSQAS MEVTSNMAPD 360 EMIEDHTVGS CKEVSSLCRK MLSGSMEACP GAKITASENL SEVAEDRRLQ QVESTSPVLT 420 DFDDFIIDPY ENKEEDEQNL RELNGQIDVH NHQSYCPTQA TMEVTTEIAP DELMEACPVD 480 NCKEDNNLCR NVLSGSMEPS PGAEKAAYPN LSEVAEERKL QCMQSISTVP TNCQTKECGE 540 TSVPENLNEV AEDSRHQCVE FTSPAHTFLR AKAGAETFAS PRIAVVAKDS KLPSLEFSSP 600 ADTVLRAKAG AEAYASPRID VVAKDSKLSS MEFTSPAHTV ATFQPYADDM PTPKFTASER 660 NFLLSVLELT SPGSRPETSQ QPSCKRALLN SL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-29 | 32 | 129 | 10 | 107 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.8604 | 0.0 | callus| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2KG541700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK063426 | 1e-124 | AK063426.1 Oryza sativa Japonica Group cDNA clone:001-115-D02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025799285.1 | 0.0 | transcription factor MYB124 isoform X2 | ||||
TrEMBL | A0A2T7EYZ4 | 0.0 | A0A2T7EYZ4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Bb03405.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8903 | 38 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14350.2 | 4e-84 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2KG541700.1.p |