PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2KG514000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

HRT-like

Protein Properties

Length: 398aa MW: 44567.6 Da PI: 9.1604

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2KG514000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	53.5	4e-17	158	187	2	31
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CGv ledGs C +q v+gRKRC HKG+R+ Pavir.2KG514000.1.p 158 CGVVLEDGSSCLEQSVEGRKRCSLHKGRRV 187 *****************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MDNKQEAEKT EALLLRVFDY AWYKLQNGAC RREEILLKLE WGAASHRSSL LSRVRHMKQD 60 IFGVKVGIKI KGSGSVNTSP GIMKSMLPRV RTFVGFRPQL VNSDDSGGEA IDIPSKKISG 120 IPCGNRQARR RRSEGHKVKK IDATKRRTVP IQDSNSFCGV VLEDGSSCLE QSVEGRKRCS 180 LHKGRRVKGS PKSSSTSYPC QAEIPIPRLA EALDNLDRTQ EIIESIPHLT EDLDSSDRTQ 240 ESEIVPKNIS VTVEESLRQS NSIKAEEVKT REAPTEDGTH DASQDACICE EKASHAEPES 300 QEPQPSGRMW FELLKAQKKS ASKHAPSGSG SQTRMRDHAT PISGAVADNG PCKMVPTAGR 360 EICERQWYRG RWCFVFQKLR MAVYMWCPYT RRFTLYE*

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MDNKQEAEKT EALLLRVFDY AWYKLQNGAC RREEILLKLE WGAASHRSSL LSRVRHMKQD  60
IFGVKVGIKI KGSGSVNTSP GIMKSMLPRV RTFVGFRPQL VNSDDSGGEA IDIPSKKISG  120
IPCGNRQARR RRSEGHKVKK IDATKRRTVP IQDSNSFCGV VLEDGSSCLE QSVEGRKRCS  180
LHKGRRVKGS PKSSSTSYPC QAEIPIPRLA EALDNLDRTQ EIIESIPHLT EDLDSSDRTQ  240
ESEIVPKNIS VTVEESLRQS NSIKAEEVKT REAPTEDGTH DASQDACICE EKASHAEPES  300
QEPQPSGRMW FELLKAQKKS ASKHAPSGSG SQTRMRDHAT PISGAVADNG PCKMVPTAGR  360
EICERQWYRG RWCFVFQKLR MAVYMWCPYT RRFTLYE*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.19352	1e-180	root\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2KG514000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025802669.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBL	A0A2T7EY06	0.0	A0A2T7EY06_9POAL; Uncharacterized protein
STRING	Pavir.Bb01186.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7948	34	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	5e-13	effector of transcription2

Link Out ? help Back to Top
Phytozome	Pavir.2KG514000.1.p