PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG497800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 668aa    MW: 70993.7 Da    PI: 7.1674
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG497800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.25.1e-07273295426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          ++C++f+r G C+ Gd C F+Hg
  Pavir.2KG497800.1.p 273 VPCPNFRRPGGCPSGDCCEFSHG 295
                          79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484034.54E-1364144IPR020683Ankyrin repeat-containing domain
PfamPF127965.4E-967137IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.208.3E-1569148IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.41470140IPR020683Ankyrin repeat-containing domain
SMARTSM002481.970100IPR002110Ankyrin repeat
CDDcd002042.89E-1272143No hitNo description
SMARTSM002480.0013105137IPR002110Ankyrin repeat
PROSITE profilePS5008812.583105140IPR002110Ankyrin repeat
PROSITE profilePS5010312.54269297IPR000571Zinc finger, CCCH-type
SMARTSM003560.14269296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4273296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-4301334IPR000571Zinc finger, CCCH-type
SMARTSM0035621305328IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MGDLADLACA GEAARSHLAG GGRRDLLAEL LELAAADDAA GFREKLAAAG GDAELADGVG  60
LWYGRSKAYE PRTPLMVAAT YGSAAVVSLL LGLGCVDVNR RPGVDGATPL HCAASGGSPN  120
AVAIVKVLLA AGADPVAPDA AGRFSADVIL APPASPDALG DLEMLLGRRR GLAVATLVPS  180
GSSSADEGNR SPSSRSSSLS PITVDRAKKE YPVDPTLPDI KSSVYASDEF RMFAFKVRPC  240
SRAYSHDWTE CPFVHPGENA RRRDPRKHPY TAVPCPNFRR PGGCPSGDCC EFSHGVFESW  300
LHPSQYRTRL CKEGAACARR ICFFAHDEDE LRHVPHNSGA GLLSPRASSS IDMTAAAAAL  360
GLLPGSPTRH FVPPPLSPSA ASNGGGAAAH WLQGSRLRSS FNARDAQADD FGALLEWESQ  420
YLGALNLPQS SRSQPRLSSG LSIRPTAIAP SNLEDVYASD MTMSPRFTND QSHSVYSPAH  480
KSALLNKFHQ QKGLLSPVNT NRMYSPRGLD PSIIHSPFGG MSPRSPRTME PTSPRSARVG  540
ATVTQRDMFD HFSSVNKHQL PSVGSPRNLN ASWGNIGTPK SKVDWGVDNE ELVRLRHPAQ  600
PGAAEEEPDV SWVQSLVNNA ELNGKRGEMA GMASGPMSRP DLSSQGDLVD QTMIASWLEQ  660
QMHLEPK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.234230.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG497800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0543660.0BT054366.1 Zea mays full-length cDNA clone ZM_BFc0002O06 mRNA, complete cds.
GenBankBT0544470.0BT054447.1 Zea mays full-length cDNA clone ZM_BFc0063F04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801940.10.0zinc finger CCCH domain-containing protein 50-like
SwissprotQ84SL20.0C3H50_ORYSJ; Zinc finger CCCH domain-containing protein 50
TrEMBLA0A2T7EXI30.0A0A2T7EXI3_9POAL; Uncharacterized protein
STRINGPavir.J07041.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-136CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]