PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2KG492900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 83aa MW: 9796.18 Da PI: 9.5197 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.3 | 9.9e-10 | 19 | 53 | 1 | 37 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37 r +WT+eE+e+ +da k++G W+ I +++ ++t+ Pavir.2KG492900.1.p 19 REKWTEEEHEKSLDALKLYGRS-WHQIQEHVD-TKTA 53 789*****************55.*********.9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.38E-10 | 5 | 53 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.9E-7 | 19 | 53 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.3E-7 | 19 | 53 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.19E-5 | 21 | 54 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 83 aa Download sequence Send to blast |
MLTQQFKYVR KPYTITKQRE KWTEEEHEKS LDALKLYGRS WHQIQEHVDT KTAVPKVLNP 60 HDSCDKFSCY TRNLARPVPH LA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.13024 | 1e-52 | leaf| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Transcription factor involved in phytochrome A-mediated cotyledon opening. Controlled by the central oscillator mediated by LHY and CCA1. Part of a regulatory circadian feedback loop. Regulates its own expression. {ECO:0000269|PubMed:14523250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2KG492900.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Up-regulated transiently by red light and far red light. {ECO:0000269|PubMed:14523250, ECO:0000269|PubMed:19805390}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966527.1 | 3e-20 | uncharacterized protein LOC101785788 | ||||
Swissprot | B3H5A8 | 2e-19 | RVE7_ARATH; Protein REVEILLE 7 | ||||
Swissprot | F4J2J6 | 2e-19 | RVE7L_ARATH; Protein REVEILLE 7-like | ||||
TrEMBL | A0A0A9D841 | 2e-19 | A0A0A9D841_ARUDO; Uncharacterized protein | ||||
TrEMBL | A0A453TC59 | 2e-19 | A0A453TC59_AEGTS; Uncharacterized protein | ||||
STRING | Pavir.J08553.1.p | 4e-56 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2722 | 36 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18330.1 | 9e-22 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2KG492900.1.p |
Publications ? help Back to Top | |||
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