PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2KG484800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 380aa MW: 40473.2 Da PI: 7.3079 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.1 | 6.6e-13 | 309 | 354 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ +k + +++L +Av+YIk+Lq Pavir.2KG484800.1.p 309 SIAERVRRTKISERIRKLQELVPNM----DKQTNTSDMLDLAVDYIKDLQ 354 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.945 | 303 | 353 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.53E-16 | 306 | 365 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.04E-13 | 307 | 358 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.3E-16 | 308 | 375 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.8E-10 | 309 | 354 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.4E-13 | 309 | 359 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MYGSPVSKDL NLPVQPPMAS SGLLRYRSAP SSVLGELCED FLPAGARAAS PDAGADGVFA 60 RFLADHHIRD DKPAPAPAPA AGHFASEADM ASQQQQQMMF HSQHQHQEMV DAKSGLYRTV 120 SSGMETASAA GAGVGSSNLA RQSSSPAGFL DHLNMENGYG AMLRAGMSMG FRDGSSAATA 180 DSFAGGGSRL KGQLSFSSRQ GSLMSQISEM DSEEVGGSSP EAAGAGRGYI PRYAMGSGWE 240 DSSSLMSENL SGMKRPRDSL EPGQNGLAHQ FSLPKTSSEM ASIEKFLQFQ DAVPCKIRAK 300 RGCATHPRSI AERVRRTKIS ERIRKLQELV PNMDKQTNTS DMLDLAVDYI KDLQKQVKVL 360 KESNANCTCS ASKNQQHSD* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.3405 | 0.0 | callus| leaf| stem |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00646 | PBM | Transfer from LOC_Os08g39630 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2KG484800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804212.1 | 0.0 | transcription factor bHLH130-like | ||||
Refseq | XP_025804213.1 | 0.0 | transcription factor bHLH130-like | ||||
TrEMBL | A0A3L6QNR1 | 0.0 | A0A3L6QNR1_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ba00676.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1884 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 1e-63 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2KG484800.1.p |