PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG420300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRF
Protein Properties Length: 265aa    MW: 27746.9 Da    PI: 4.8001
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG420300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC72.64.4e-23175219145
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                          ++epgrCrRtDGKkWRC+r +++++k+CErH+hrgr+r  + ++e
  Pavir.2KG420300.1.p 175 EPEPGRCRRTDGKKWRCWRSTIPNEKYCERHMHRGRKRPVQLVVE 219
                          69************************************9998875 PP
2QLQ54.34.1e-19109144237
                  QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                          aFTa+Qlq+L++Q  +y+y+aa++PvP +L+++i+k
  Pavir.2KG420300.1.p 109 AFTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWK 144
                          8*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.7E-8108144IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.2E-12109143IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.922109144IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166722.471175219IPR014977WRC domain
PfamPF088791.0E-19176214IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MAAEGEAKNP SGGGGGGGDN PQVEAAPSAP APAEGEAVVA AAQGTGQGPE GEKADREGEK  60
DDRACRDLVL VEDPEVVAVE DPEEAAATAA LQEEMKALVA SIPDGAGAAF TAMQLQELEQ  120
QSRVYQYMAA RVPVPTHLVF PIWKSVTGAS SEGAQKYPTL MGLATLCLDF GKNPEPEPGR  180
CRRTDGKKWR CWRSTIPNEK YCERHMHRGR KRPVQLVVED DEPDSASGSK STPGKATEGA  240
KKADDKSPSN KKLAVAAPAA VQST*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.206870.0leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in shoots (Ref.1, PubMed:24854713). Expressed in developing leaves (Ref.1, PubMed:24854713). {ECO:0000269|PubMed:24854713, ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of cell proliferation in developing shoots and leaves (PubMed:24854713). Does not possess transactivation activity (PubMed:24854713). {ECO:0000269|PubMed:24854713}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG420300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0425130.0BT042513.1 Zea mays full-length cDNA clone ZM_BFb0310G14 mRNA, complete cds.
GenBankBT0874370.0BT087437.1 Zea mays full-length cDNA clone ZM_BFb0076N13 mRNA, complete cds.
GenBankEF5158490.0EF515849.1 Zea mays putative growth-regulating factor 10 (GRF10) mRNA, complete cds.
GenBankEU9606010.0EU960601.1 Zea mays clone 226522 growth-regulating factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800926.11e-180growth-regulating factor 11-like
SwissprotA5HEG91e-158GRF10_MAIZE; GRF-interacting factor 10
TrEMBLA0A2S3H2A31e-179A0A2S3H2A3_9POAL; Uncharacterized protein
STRINGSi030809m1e-165(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67353152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.12e-31growth-regulating factor 2
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]
  3. Zhang D, et al.
    GRF-interacting factor1 Regulates Shoot Architecture and Meristem Determinacy in Maize.
    Plant Cell, 2018. 30(2): p. 360-374
    [PMID:29437990]