PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG400200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 230aa    MW: 25518.9 Da    PI: 9.8136
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG400200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.51.2e-12130185358
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                          + +r rr+ +NRe+ArrsR RK+ ++ eL   v  L + N++L +el++    ++ 
  Pavir.2KG400200.1.p 130 DERRRRRMVSNRESARRSRMRKQRQLTELWAQVVHLRGTNRRLLDELNHAMRGCSD 185
                          5679999*****************************************98877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.6E-9128180No hitNo description
SMARTSM003381.1E-14128192IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.059130177IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.74E-11132181No hitNo description
PfamPF001705.4E-10132186IPR004827Basic-leucine zipper domain
PROSITE patternPS000360135150IPR004827Basic-leucine zipper domain
CDDcd147023.49E-13137181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MAMHQYNKLK LPNSTKRKGA REGGFSLSLV LATPTSLLKI STGQTSEVAM LHQHHYHGGV  60
AMANLHCLTS PNPAFHAHYH SNMIAMPPTP FQFPPTFEPT HEAPAAVGNS PAGSGSADDA  120
YGGRMVMAED ERRRRRMVSN RESARRSRMR KQRQLTELWA QVVHLRGTNR RLLDELNHAM  180
RGCSDMCCEN ARLEKEKAEL GTKLERLMQA QNTTTPSSSS EPRDDTATE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144151RRSRMRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG400200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799413.11e-118bZIP transcription factor 2-like
TrEMBLA0A2T7ETI31e-118A0A2T7ETI3_9POAL; Uncharacterized protein
STRINGPavir.Bb02514.1.p1e-163(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118635126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.19e-11basic leucine-zipper 42