PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.2KG386700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 209aa MW: 21923.5 Da PI: 7.4154 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 36.7 | 9.1e-12 | 128 | 190 | 3 | 63 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeek..vkeLeaeNkaLkkeleelkkevaklksev 63 +++r +r++kNRe+A rsR+RK+a++ eLe++ v eLe+e + L++e+e+l+ ++++l+++v Pavir.2KG386700.1.p 128 SDRRKKRMIKNRESAARSRARKQAYVRELEQEayVRELEQEVQLLQQENESLRVKYEQLRASV 190 689**************************99855789********************999876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.2E-12 | 126 | 192 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.301 | 128 | 187 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.3E-8 | 129 | 160 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.8E-11 | 130 | 189 | No hit | No description |
SuperFamily | SSF57959 | 1.34E-7 | 130 | 187 | No hit | No description |
CDD | cd14707 | 2.92E-17 | 130 | 189 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 133 | 148 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 209 aa Download sequence Send to blast |
MAAAMDLEDD EDIWGNAASS PSATPPQPLA AAAASPCGAF ISTQLSLSSR LHLLSTAGGS 60 SAGIYAADGG RRHMDLGAGF RNAAASPAPF FSAYNPDAGA ARSALEDEMC LGPGAAAAAW 120 AGAGAGGSDR RKKRMIKNRE SAARSRARKQ AYVRELEQEA YVRELEQEVQ LLQQENESLR 180 VKYEQLRASV EVAGPVKKTL QRMPSAPF* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.2KG386700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF093789 | 3e-39 | EF093789.1 Zea mays delayed flowering1 (DLF1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025803630.1 | 1e-100 | ABSCISIC ACID-INSENSITIVE 5-like protein 2 | ||||
TrEMBL | A0A2S3H1W2 | 2e-98 | A0A2S3H1W2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J04490.1.p | 1e-103 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9764 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G17770.2 | 4e-15 | basic region/leucine zipper motif 27 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.2KG386700.1.p |