PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2KG306300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 213aa MW: 22204.2 Da PI: 10.0634 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 77.3 | 2.1e-24 | 35 | 78 | 5 | 47 |
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACg 47 Y+eClkNhAaslGghavDGCgEfmps+g++ +++++lkCaACg Pavir.2KG306300.1.p 35 LYRECLKNHAASLGGHAVDGCGEFMPSPGANpADPTSLKCAACG 78 7******************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.7E-19 | 35 | 78 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-17 | 36 | 78 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 21.127 | 36 | 87 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 7.5E-23 | 36 | 78 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.51E-16 | 89 | 156 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-28 | 90 | 157 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.6E-23 | 98 | 154 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MEAMDVKYKP LMFPNGAAVK KVKPAAVAPA AGEPLYRECL KNHAASLGGH AVDGCGEFMP 60 SPGANPADPT SLKCAACGLP SAQLTPSSAP PPGAAMPRKR FRTKFTAEQK QRMQELSERL 120 GWRLQKRDEA IVDEWCRDIG VGKGVFKVWM HNNKHNFLGG HSARRSASSS APGAAAPSFN 180 IGFNINGAAS SAPTATAGHP DNVNGASSPQ SA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 2e-20 | 98 | 156 | 17 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.3351 | 1e-130 | callus |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2KG306300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU967892 | 1e-117 | EU967892.1 Zea mays clone 306859 ZF-HD homeobox protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012698877.1 | 7e-70 | zinc-finger homeodomain protein 9 | ||||
Swissprot | Q6ER21 | 1e-42 | ZHD9_ORYSJ; Zinc-finger homeodomain protein 9 | ||||
TrEMBL | A0A0E0QRE2 | 9e-82 | A0A0E0QRE2_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI09G10950.1 | 1e-82 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3646 | 33 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60480.1 | 7e-25 | homeobox protein 26 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2KG306300.1.p |