PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AT5G60480.1 | ||||||||
Common Name | AtHB26, HB26, MUF9.11, ZHD12 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 191aa MW: 21686.9 Da PI: 10.3795 | ||||||||
Description | homeobox protein 26 | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 100.7 | 1e-31 | 3 | 58 | 4 | 58 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 v Y+eClkNhA+slGgha+DGCgEf+p++++ +++ +l+C ACgCHRnFHRr+++ AT5G60480.1 3 VLYNECLKNHAVSLGGHALDGCGEFTPKSTTIlTDPPSLRCDACGCHRNFHRRSPS 58 79**************************99999********************976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-34 | 1 | 65 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.4E-26 | 3 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.081 | 5 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.7E-32 | 5 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-22 | 109 | 172 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.56E-14 | 112 | 172 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.1E-31 | 115 | 172 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009046 | anatomy | flower |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 191 aa Download sequence Send to blast |
MVVLYNECLK NHAVSLGGHA LDGCGEFTPK STTILTDPPS LRCDACGCHR NFHRRSPSDG 60 FSQHRSPPSP LQLQPLAPVP NLLLSLSSGF FGPSDQEVKN KFTVERDVRK TAMIKKHKRT 120 KFTAEQKVKM RGFAERAGWK INGWDEKWVR EFCSEVGIER KVLKVWIHNN KYFNNGRSRD 180 TTSSMSLNLK L |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 3e-17 | 114 | 172 | 16 | 74 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 18424359 | 0.0 | ||||
Expression Atlas | AT5G60480 | - | ||||
AtGenExpress | AT5G60480 | - |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AT5G60480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Intact With | |||||
BioGRID | AT1G69600 | |||||
IntAct | Search Q9FKJ9 |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
T-DNA Express | AT5G60480 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB011483 | 0.0 | AB011483.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUF9. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_200856.2 | 1e-143 | homeobox protein 26 | ||||
Swissprot | Q9FKJ9 | 1e-144 | ZHD12_ARATH; Zinc-finger homeodomain protein 12 | ||||
TrEMBL | A0A178UPU6 | 1e-141 | A0A178UPU6_ARATH; ZHD12 | ||||
STRING | AT5G60480.1 | 1e-142 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5166 | 25 | 49 | Representative plant | OGRP91 | 16 | 237 |
Link Out ? help Back to Top | |
---|---|
Phytozome | AT5G60480.1 |
Entrez Gene | 836169 |
iHOP | AT5G60480 |
wikigenes | AT5G60480 |
Publications ? help Back to Top | |||
---|---|---|---|
|