PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG303000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 455aa    MW: 46005.6 Da    PI: 7.4858
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG303000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.84.5e-32257310255
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Pavir.2KG303000.1.p 257 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 310
                          9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.51E-15254311IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-28255311IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-23257310IPR006447Myb domain, plants
PfamPF002498.4E-7258309IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009887Biological Processorgan morphogenesis
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010158Biological Processabaxial cell fate specification
GO:0010229Biological Processinflorescence development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MEASSAASPD LSLHISLPSS APGSGPSGGR ATVGGAGGGG GGGVGGDPWR RLNGSTASTE  60
LSLSPPAEQE RADALPWRHR PSAAGAPPSA ATTSAGAALM PTMPMLQPLD GGGASAAAPI  120
RGIPIYNGPG GFPFLPSAAG GDGGHHQKLG FYGSYHPATW PSSLGSTSPS PGAPPPAPQD  180
PASAFLSPAA HHHHRMLSAS GRLNGMLSDT LRGYGGGGGG LGGIGGHHHH HLHGAQPFGL  240
GSRFMPKLPA KRSMRAPRMR WTSTLHARFV HAVELLGGHE RATPKSVLEL MDVKDLTLAH  300
VKSHLQMYRT VKSTDKPAAS SGPNDGGSGD EDFPGAGQAA SGGDNMCGSG ARPFGEHHRS  360
TSEGAASSVG GGGGDMDQSS AGNTSTRWSN SSRDPWLSSN SCNMDAHRLA GLSSPIENAE  420
PCRSSSSQVS NHELSSPSLE FTLGRPDWQG ADHD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-16258312357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-16258312357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-16258312357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-16258312357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.92491e-83callus
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers. {ECO:0000269|PubMed:18594992}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG303000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9253980.0EU925398.1 Zea mays milkweed pod1 (mwp1) mRNA, complete cds.
GenBankEU9546670.0EU954667.1 Zea mays clone 1476543 myb-like DNA-binding domain, SHAQKYF class family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956748.10.0probable transcription factor RL9
SwissprotQ0J2351e-166ROLL9_ORYSJ; Probable transcription factor RL9
TrEMBLA0A368Q0M00.0A0A368Q0M0_SETIT; Uncharacterized protein
STRINGSi032049m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25583787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.12e-57G2-like family protein