PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2KG215300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 253aa MW: 28685.3 Da PI: 8.3917 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 53.5 | 7.8e-17 | 54 | 133 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Yn Y+ e+GF +r +s+++++n +++++vCs++g++++ ++k + r gC ++++ +++d+ w++++++++HnH+l+ Pavir.2KG215300.1.p 54 DYYNLYSWEIGFGIRYGRSRTNSNNY-RMRQDLVCSCQGQNTSATTK---------TCRRGCPTMIRLLRTQDHGWYISRFVKDHNHDLS 133 69****************99995555.999**********9997655.........8999****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.5E-13 | 54 | 133 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MKRSHAISGP HARIAPWEES AVSKALRAAE SSTNKLVFEP AVGTTFNSCE EAKDYYNLYS 60 WEIGFGIRYG RSRTNSNNYR MRQDLVCSCQ GQNTSATTKT CRRGCPTMIR LLRTQDHGWY 120 ISRFVKDHNH DLSDNYAENK QWNSHNQIDA ITKDFIRKLR NNNVSIGRVC SILGVADSAQ 180 AAPLRKETDV CTKLSQENMI NDLGKTLDLL QEMNDADPDM SVKFRVDSEG RLESMIWCTG 240 KINRTMNISE MQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2KG215300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822596.1 | 1e-120 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_025822597.1 | 1e-120 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
TrEMBL | A0A1B6Q0S6 | 2e-91 | A0A1B6Q0S6_SORBI; Uncharacterized protein | ||||
TrEMBL | A0A1W0VV91 | 2e-91 | A0A1W0VV91_SORBI; Uncharacterized protein | ||||
STRING | Pavir.Bb01348.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP619 | 19 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06250.1 | 2e-15 | FAR1-related sequence 7 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2KG215300.1.p |