PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2KG195700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 162aa MW: 18429.6 Da PI: 11.1055 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.6 | 1.9e-10 | 19 | 65 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++WT+eEd +l ++++++G ++ + ++m gR+l +c+ rw+ +l Pavir.2KG195700.1.p 19 LAWTPEEDARLEHLFREHGFRHCHYMTARMVSGRSLRECRGRWRHHL 65 68*******************66666666666***********9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.274 | 13 | 69 | IPR017930 | Myb domain |
SMART | SM00717 | 0.0062 | 17 | 97 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.9E-7 | 20 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.43E-7 | 20 | 65 | No hit | No description |
SuperFamily | SSF46689 | 1.1E-10 | 20 | 92 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.5E-9 | 20 | 67 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MGSAPVPLAA PVLRIRLPLA WTPEEDARLE HLFREHGFRH CHYMTARMVS GRSLRECRGR 60 WRHHLARGVG CWRNMSRAVH GQTSRVIRRC WREVRHNDAF LSKLWKPVST PAHQHAAGTE 120 PSSQQPVFTC CVGQCLLLTE PLLACLRNLL IQQLIALLFV S* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2KG195700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821894.1 | 8e-65 | transcription factor MYB73-like | ||||
TrEMBL | A0A3L6QJ99 | 7e-65 | A0A3L6QJ99_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Bb01599.1.p | 2e-73 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12569 | 20 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 8e-07 | myb domain protein 73 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2KG195700.1.p |