PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG190900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 296aa    MW: 31950.1 Da    PI: 6.801
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG190900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like75.57.3e-244690145
              G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45
                         ++rlrWt+eLHerFveav+qLGG+++AtPk +l++m+v+gLt++h
  Pavir.2KG190900.1.p 46 RQRLRWTNELHERFVEAVTQLGGPDRATPKGVLRIMGVPGLTIYH 90
                         58******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.58E-104592IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-224590IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-164789IPR006447Myb domain, plants
PfamPF143799.5E-9127160IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MYSSKPEASF GSTHTNSVAN QQQMELAGNN MGPSNGANNN NNLAARQRLR WTNELHERFV  60
EAVTQLGGPD RATPKGVLRI MGVPGLTIYH KYRLAKYIPD ASADGNKADN KDPGDLLAGL  120
EGSSGLPISE ALKLQMEVQK RLHEQLEGKY LQKIIEEQQR LTGVKSETPA AGASVTVSSD  180
QFPDSERTEP STPAPTSKSP TKVVTSNRDT GERTEATKST CRGDSLSRHE PLTPDSNCQN  240
GSPPASPNHE RAAKRQRGSG NDFLDAQADF SLPRNIFESS SGSEFQPYSM SYSGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-174697158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-174697158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-174697158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-174697158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.130191e-176callus| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG190900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0332052e-71BT033205.1 Zea mays full-length cDNA clone ZM_BFb0066I21 mRNA, complete cds.
GenBankBT0398992e-71BT039899.1 Zea mays full-length cDNA clone ZM_BFc0050C09 mRNA, complete cds.
GenBankBT0411542e-71BT041154.1 Zea mays full-length cDNA clone ZM_BFc0181P18 mRNA, complete cds.
GenBankBT0858912e-71BT085891.1 Zea mays full-length cDNA clone ZM_BFc0076P02 mRNA, complete cds.
GenBankBT0863352e-71BT086335.1 Zea mays full-length cDNA clone ZM_BFc0154D10 mRNA, complete cds.
GenBankEU9764462e-71EU976446.1 Zea mays clone 894637 MYB-CC type transfactor mRNA, complete cds.
GenBankJX4699002e-71JX469900.1 Zea mays subsp. mays clone UT3140 G2-like transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802918.10.0myb family transcription factor PHL7-like
SwissprotQ9SJW02e-77PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A2S3GYP40.0A0A2S3GYP4_9POAL; Uncharacterized protein
STRINGPavir.Bb01632.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22203896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.13e-70G2-like family protein