PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2KG144300.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | AP2 | ||||||||
Protein Properties | Length: 387aa MW: 42307.2 Da PI: 7.7986 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.7 | 2.5e-17 | 112 | 161 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Pavir.2KG144300.2.p 112 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 161 78*******************......55************************998 PP | |||||||
2 | AP2 | 45.1 | 2.6e-14 | 204 | 254 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+++k grW+A+ g +k+++lg f+++ eAa+a+++a+ +++g Pavir.2KG144300.2.p 204 SKYRGVTQHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDRAAIRFNG 254 89********.7******...5...334336**********99**********99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.19E-16 | 112 | 170 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.6E-9 | 112 | 161 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.754 | 113 | 169 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-17 | 113 | 169 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-30 | 113 | 175 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-17 | 204 | 263 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.5E-10 | 204 | 254 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.09E-26 | 204 | 264 | No hit | No description |
PROSITE profile | PS51032 | 16.568 | 205 | 262 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-17 | 205 | 263 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.5E-34 | 205 | 268 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-7 | 206 | 217 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-7 | 244 | 264 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MVLDLNAADS PTPGSASATS SSSGAGGFFR FDLLGGSPDE EGCCSPSPPV VTRQLFPSPH 60 PDAASAAAAS PPPDGPPPPE ASGPWARRAA DFAPSSPAAG KKSRRGPRSR SSQYRGVTFY 120 RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR GLDADINFHL KDYEADLKQM 180 KNWTKEEFVH ILRRQSTGFA RGSSKYRGVT QHKCGRWEAR MGQLLGKKYI YLGLFDSEIE 240 AARAYDRAAI RFNGPDAVTN FDSSSYDGDV PLPPEIEKDV VDGDILDLNL RISQPNVHFP 300 KSDCILTGFG VNCNSPEASS SIVSQPISPQ WLAHPHSTLV PPQQPHLYAS PSPGFFVNLR 360 GEEFLRPWHW CRGGSSCEQW IGQQWQ* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First detected in the boundary region of the shoot apical meristem (SAM) and the surrounding sheath. Expressed at low levels in vegetative organs, mostly in the sheaths. In inflorescence tissues, observed in the branch meristem and spikelet meristem regions, as well as in their vasculature and surrounding sheath (PubMed:17144896). Accumulates in incipient rudimentary- and empty-glume primordia (PubMed:22003982). Highly abundant in young developing panicles, but becomes later present at low levels in developing panicles and seeds. Found primarily in the boundary region of glume primordia (PubMed:17144896). {ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982}. | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in seedlings and developing panicles (PubMed:17144896, PubMed:20017947, PubMed:22003982). Mostly expressed in newly emerging spikelet meristems and, at low levels, in shoots, roots, panicles, mature spikelets and sheaths (PubMed:17144896). {ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2KG144300.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT088249 | 0.0 | BT088249.1 Zea mays full-length cDNA clone ZM_BFc0098F06 mRNA, complete cds. | |||
GenBank | EU974186 | 0.0 | EU974186.1 Zea mays clone 442332 floral homeotic protein mRNA, complete cds. | |||
GenBank | FJ686697 | 0.0 | FJ686697.1 Zea mays sister of indeterminate spikelet 1 (sid1) mRNA, partial cds. | |||
GenBank | KJ726939 | 0.0 | KJ726939.1 Zea mays clone pUT3485 AP2-EREBP transcription factor (EREB121) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804503.1 | 0.0 | floral homeotic protein APETALA 2-like isoform X2 | ||||
Swissprot | Q8H443 | 1e-165 | AP23_ORYSJ; APETALA2-like protein 3 | ||||
TrEMBL | A0A2S3GX67 | 0.0 | A0A2S3GX67_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J37968.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 2e-86 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2KG144300.2.p |
Publications ? help Back to Top | |||
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