PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG138100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 499aa    MW: 53370.8 Da    PI: 4.9211
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG138100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM62.91e-19101431128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkd 89 
                          lp+++ F P+de  v +yL +++ g + +++  i e d +++ Pw+L  + +++++e +f ++ + +  +g+r++r  +  g W+ + + 
  Pavir.2KG138100.1.p  10 LPACLVFAPEDEVAVEYYLIPRLLGWPPQMDGLILEDDPLSAPPWELL-ERNGRKDEAFFLAEGQVRCGKGTRQKRtCAGGGWWEGQKTC 98 
                          578899************************999**************7.445677799******************44556666644332 PP

                  NAM  90 kevlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           e  +k        ++e+ + kk L f+ g  +kg +t Wvmhey++
  Pavir.2KG138100.1.p  99 AEG-NKlrfpggggDKEVAWHKKALNFHGGGGEKG-STGWVMHEYAV 143
                          222.223567888888889*********8888887.9********86 PP
2NAM75.71.1e-231803091128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk. 88 
                          lppGf F P+d ++v +yL +++ g++l+l+  i + d +++ Pw+L ++ ++ +++ +fF+  + ++ +g+r++r  +  g+W+   + 
  Pavir.2KG138100.1.p 180 LPPGFLFAPEDGDVVEHYLLRRILGQPLPLDGLILDGDPLSAPPWELLAR-NGCRDDAFFFTLGQARSGKGSRQRRtCAGGGFWNGERNc 268
                          79****************************999**************733.4445689******************77789***965542 PP

                  NAM  89 .dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           d e l+   + e+ + kk L f +g ++   +t Wvmhey++
  Pavir.2KG138100.1.p 269 aDGEKLRVpgGAEVAWRKKALSFQEGGEKA--STGWVMHEYAI 309
                          23222222447778999*******887777..8********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-263161IPR003441NAC domain
PROSITE profilePS5100524.810162IPR003441NAC domain
PfamPF023651.5E-1114142IPR003441NAC domain
SuperFamilySSF1019411.7E-29173314IPR003441NAC domain
PROSITE profilePS5100527.5180344IPR003441NAC domain
PfamPF023651.3E-15181308IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MAAALGVAEL PACLVFAPED EVAVEYYLIP RLLGWPPQMD GLILEDDPLS APPWELLERN  60
GRKDEAFFLA EGQVRCGKGT RQKRTCAGGG WWEGQKTCAE GNKLRFPGGG GDKEVAWHKK  120
ALNFHGGGGE KGSTGWVMHE YAVTAPEDLA RSPLRLYHIR RSGYGRKQSG AMEVPRALGL  180
PPGFLFAPED GDVVEHYLLR RILGQPLPLD GLILDGDPLS APPWELLARN GCRDDAFFFT  240
LGQARSGKGS RQRRTCAGGG FWNGERNCAD GEKLRVPGGA EVAWRKKALS FQEGGEKAST  300
GWVMHEYAIT APDHLAESGH GKKRKRGEAD SLADEAAPAA ARRRVAEDAL LDMSTSQPSC  360
SSSSMVMVEH ADGNCPTDAD HQLAAPVSIP ANQQDLNPGI TADTNLDLGF LDNFDIDEFM  420
RSLGDLPSTS TDPCVLPAVT DTGAYLDADA VGSSFFGQMG SQYNGVGTGQ MASSSLHRGC  480
MEPADSFVTG LNQSYAAC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-1317830913140Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320326GKKRKRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG138100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813463.10.0uncharacterized protein LOC112890817
TrEMBLA0A2T7E0R60.0A0A2T7E0R6_9POAL; Uncharacterized protein
STRINGPavir.Bb00848.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.25e-11NAC domain containing protein 50