PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2KG080500.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GRF | ||||||||
Protein Properties | Length: 474aa MW: 50730.7 Da PI: 7.5671 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 75.2 | 6.9e-24 | 95 | 138 | 2 | 45 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Pavir.2KG080500.2.p 95 LEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 138 69***************************************986 PP | |||||||
2 | QLQ | 59.4 | 1e-20 | 27 | 63 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+ +L++Q+l+yKyLaan P+Pp Ll++i++ Pavir.2KG080500.2.p 27 GPFTPSQWIELEHQALIYKYLAANSPIPPSLLVPIRR 63 59*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.7E-12 | 27 | 63 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.2E-15 | 28 | 62 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.503 | 28 | 63 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.65 | 94 | 138 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.7E-20 | 96 | 137 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0061062 | Biological Process | regulation of nematode larval development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 474 aa Download sequence Send to blast |
MNLCSLSGLS SVSLCSSMQG AMARVRGPFT PSQWIELEHQ ALIYKYLAAN SPIPPSLLVP 60 IRRSIASSPY PPSYFGTSTL GWGSFQLGYS GNADLEPGRC RRTDGKKWRC SRDAVADQKY 120 CERHMNRGRH RSRKHVEGQP GHAAKAMSAA VAAAAATQPP ALAASGAGAS AAGLTVSQHQ 180 QPVKSYSAGA TDPCSLQYNR ELVNKQNESD NMQDSDNLSM LTSMSTRNPG SLFPFSKQNN 240 PFEVTSSRLE FGLVSSDSLM SSPHSSLEHV NLLSSQSLNE NQSSASLQHF VDWPRTPAQG 300 GLSWADAEDM QAQRSQLSIS APMASSELSS ASTSPIHEKL MLSPLKLSRE YSPIGLSIAA 360 SRDEVSQLEA NWATMFRDSS MGGPLGEVLT KNGNGEARNC LRAPLNLLTD CWDSSPGMES 420 SPVGVLQKTT FGSVSSSTGS SPRMENHGAY DGISNLRDDL GSIVVNHPSI RLM* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.5986 | 0.0 | callus| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2KG080500.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795429.1 | 0.0 | growth-regulating factor 6-like | ||||
Swissprot | Q6AWY3 | 0.0 | GRF6_ORYSJ; Growth-regulating factor 6 | ||||
TrEMBL | A0A2T8I0S6 | 0.0 | A0A2T8I0S6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J11763.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 2e-49 | growth-regulating factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2KG080500.2.p |
Publications ? help Back to Top | |||
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