PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2KG047300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 349aa MW: 38891.4 Da PI: 6.5922 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.2 | 4.8e-51 | 49 | 180 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 + pGfrFhPtdeelv++yL++kv+gk+l++ e+ik++diyk++PwdLp +++ +++kewyfF+ r +ky+++ r+nr+t sg+Wkatg d Pavir.2KG047300.1.p 49 MLPGFRFHPTDEELVTFYLRRKVAGKRLSI-EIIKDFDIYKHDPWDLPkSSTISGDKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGID 137 579***************************.89***************445556899********************************* PP NAM 90 kevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++s+ g +glkk+Lvfy+g+a kg+kt+W+mhe+rl Pavir.2KG047300.1.p 138 RPIYSAaagrAGDSIGLKKSLVFYRGSAGKGTKTEWMMHEFRL 180 *****988777778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-55 | 48 | 207 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.966 | 49 | 207 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-25 | 51 | 180 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MPTRSSSSSM VQEQHHMAKE RSLEMKGIDR GEGAAEEVVL VGDEEEEDML PGFRFHPTDE 60 ELVTFYLRRK VAGKRLSIEI IKDFDIYKHD PWDLPKSSTI SGDKEWYFFC LRGRKYRNSI 120 RPNRVTGSGF WKATGIDRPI YSAAAGRAGD SIGLKKSLVF YRGSAGKGTK TEWMMHEFRL 180 PPRPENPHTS PSEQEAEVWT ICRIFRRSIT YKKHPQQQQV AGKVSTAAVA QPDSSSITGS 240 LESDTGDEYT NGGLRPPPQA QAISSVNDGY GYGYSSQQFQ GQWNSSALHA AATAPLPSPT 300 TMAAFHHGVL SSPAAPDDMY YKDGSSWDDI GRMMMELTDD LFYDSRHA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-49 | 44 | 213 | 10 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2KG047300.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025803594.1 | 0.0 | transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 2e-80 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A2T7EKN6 | 0.0 | A0A2T7EKN6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Bb00240.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1191 | 38 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 5e-80 | NAC domain containing protein 42 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2KG047300.1.p |