PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG539200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 89aa    MW: 9783.02 Da    PI: 10.0251
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG539200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.99e-0914541454
                         HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         d+iN+ +++L+ llP++ + +s+  s    L++++ YIksL
  Pavir.1NG539200.1.p 14 DEINELISKLQALLPSSRRRGSGQASTTKLLKETCSYIKSL 54
                         68**************7799********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.572154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-61454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-91470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-91475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MSSRRSSRGN ISEDEINELI SKLQALLPSS RRRGSGQAST TKLLKETCSY IKSLHREVDD  60
LSDRLSNLMS TMDSNSPGAE IIRSILRS*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, young panicles, pistil, lemma and palea. Expressed at low levels in leaves. {ECO:0000269|PubMed:23136524}.
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea (By similarity). {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. {ECO:0000269|PubMed:23136524}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG539200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9758591e-115EU975859.1 Zea mays clone 503296 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791523.12e-54transcription factor ILI5
SwissprotA2X9L84e-43ILI5_ORYSI; Transcription factor ILI5
SwissprotQ6YUX04e-43ILI5_ORYSJ; Transcription factor ILI5
TrEMBLA0A2S3GT605e-53A0A2S3GT60_9POAL; Uncharacterized protein
TrEMBLA0A2T7FC215e-53A0A2T7FC21_9POAL; Uncharacterized protein
TrEMBLA0A3L6QJR35e-53A0A3L6QJR3_PANMI; Transcription factor ILI5
STRINGPavir.J39793.1.p1e-54(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92838145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.16e-28bHLH family protein