PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG450500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ZF-HD
Protein Properties Length: 418aa    MW: 44934.3 Da    PI: 7.2322
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG450500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer90.51.6e-28161214358
          ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                          ++rY+eCl+NhAa+lG+h++DGC+Efmps g+   aaal CaACgCHR+FHRre +
  Pavir.1NG450500.1.p 161 QWRYRECLRNHAARLGAHVLDGCCEFMPSAGDG--AAALACAACGCHRSFHRREAV 214
                          789**************************6666..99****************975 PP
2Homeobox14.56.1e-05307362152
                          TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrR 52 
                          +r Rt+ft++q +++ e+ +    + ++p+ ++     +++g++ r+ kvW +N +
  Pavir.1NG450500.1.p 307 KRFRTKFTADQKDRMREFAHrlgwRINKPDSDAVDAFCAQVGVSRRVLKVWMHNNK 362
                          789***********987655787779****************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.2E-25162213IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.0E-23163212IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-8163212IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.765164212IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.9E-29297365IPR009057Homeodomain-like
SuperFamilySSF466891.12E-18299363IPR009057Homeodomain-like
TIGRFAMsTIGR015657.2E-27306362IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MEYKRSSHVE EEEEEEEEEE EEEEEEEDEE EARGHRYTTA AAAPVGAPQQ QQVHAQALGL  60
GSHASLMDAA AFSRPRLPPN SSLVTQPPLP PPGFMPTQRQ QQPHPRRGER ERAAGAPQPQ  120
PRRHQEAARN GVLGGGNVPP AASTLALVPG AGAVGPAEAT QWRYRECLRN HAARLGAHVL  180
DGCCEFMPSA GDGAAALACA ACGCHRSFHR REAVPGAAVA VSPSPTTPTA NSSRVMPLLL  240
APPHMQTRPH VPVSPSSAPA ALVESSSEEL RGPAPAAAHP APPPTLPPHA PLAVGGSASA  300
PPAPSKKRFR TKFTADQKDR MREFAHRLGW RINKPDSDAV DAFCAQVGVS RRVLKVWMHN  360
NKHLAKIPPS PPSSQPLPPP PQPHRHDHHP HPPPHHIHLH QPPPPQQQQQ HDALMHE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-213053741679ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.161480.0stem
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG450500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9707631e-178EU970763.1 Zea mays clone 350303 zinc finger homeodomain protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826471.11e-167zinc-finger homeodomain protein 7-like
SwissprotQ8S3Q91e-88ZHD7_ORYSJ; Zinc-finger homeodomain protein 7
TrEMBLA0A2S3GSI01e-165A0A2S3GSI0_9POAL; Uncharacterized protein
STRINGPavir.J31681.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134912329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.18e-23homeobox protein 33