PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG441600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | G2-like | ||||||||
Protein Properties | Length: 272aa MW: 29799.9 Da PI: 8.6335 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.2 | 9.1e-34 | 22 | 76 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtp+LHerFveav++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl Pavir.1NG441600.1.p 22 KPRLRWTPDLHERFVEAVTKLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRL 76 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.3E-33 | 19 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.032 | 19 | 79 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 8.4E-25 | 22 | 77 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 9.68E-17 | 22 | 78 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.2E-10 | 24 | 75 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.3E-23 | 119 | 165 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MERAGYGGAA AMGGVVLSRD PKPRLRWTPD LHERFVEAVT KLGGPDKATP KSVLRLMGMK 60 GLTLYHLKSH LQKYRLGKQS KKDTGLEASR GAFAAQGINF SAPVPPSIPS TAGNNTGEMP 120 LADALKYQIE VQRKLHEQLE VQKKLQMRIE AQGKYLHTIL EKAQNNLSYD ATGAANLEAT 180 RSQLTDFNLA LSGFMDNVSQ VCEQNNGELA KAMTEDNLTV SNLGFQLYHG VHDGEDVKCT 240 PDEGLLLLDL NIRGGYDHRS AADLKMNQHM R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-21 | 22 | 78 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-21 | 22 | 78 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-21 | 22 | 78 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-21 | 22 | 78 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-21 | 22 | 78 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-21 | 22 | 78 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-21 | 22 | 78 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-21 | 22 | 78 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.33589 | 0.0 | callus| leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG441600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808925.1 | 0.0 | myb family transcription factor PHL11-like | ||||
TrEMBL | A0A2S3GSU5 | 0.0 | A0A2S3GSU5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Aa00783.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3940 | 34 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45580.1 | 4e-66 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG441600.1.p |