PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG421000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 199aa MW: 22769.4 Da PI: 9.2439 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 57.8 | 3.7e-18 | 91 | 170 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn Y+ e+GF +r +s+k+++n t++++vCs++g+++ ++k + r gC a++++ +++d+ w+++++++eHnH+l+ Pavir.1NG421000.1.p 91 DFYNLYSWEIGFGIRYGRSRKNSNNY-RTRQDLVCSCHGQSAAGSRK---------TCRRGCPAMIRLLRTQDHGWYISRFVQEHNHDLS 170 6********************96555.99**********99987655.........899*****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.6E-14 | 91 | 170 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MGEAAQIWLP HPRSDENELR DQELVVNASV IERSPKPNII RRAISGPDAR MAPWEESAVS 60 RALRGAQGRS NKPVFEPVLG ASFNSCEEAK DFYNLYSWEI GFGIRYGRSR KNSNNYRTRQ 120 DLVCSCHGQS AAGSRKTCRR GCPAMIRLLR TQDHGWYISR FVQEHNHDLS ESYAENKQWN 180 FSQPNRCINK GFYKETKE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG421000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822596.1 | 6e-65 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_025822597.1 | 6e-65 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_025822598.1 | 3e-66 | protein FAR1-RELATED SEQUENCE 8-like isoform X2 | ||||
TrEMBL | A0A2T8I8U6 | 9e-64 | A0A2T8I8U6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J27247.1.p | 1e-132 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP619 | 19 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06250.1 | 1e-14 | FAR1-related sequence 7 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG421000.1.p |