PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG400500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 170aa MW: 19481.8 Da PI: 8.4638 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 40 | 8.2e-13 | 79 | 130 | 4 | 55 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r rr+++NRe+ArrsR RK++++ eL v L + N++L ++l++ Pavir.1NG400500.1.p 79 ERRKRRMISNRESARRSRMRKQKQLSELWAQVVHLRSTNRQLLDQLNHAIRD 130 689***************************************9988876555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 6.1E-14 | 76 | 140 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 4.9E-10 | 77 | 131 | No hit | No description |
PROSITE profile | PS50217 | 10.369 | 78 | 141 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.7E-10 | 78 | 127 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 9.38E-12 | 80 | 129 | No hit | No description |
CDD | cd14702 | 8.59E-17 | 81 | 132 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 83 | 98 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MYPAEIASVP YLSPASAASF KPHYHAATND FLFQYSNLLV PHPSYYQDVA HLVHEASLPV 60 GNKSNSEESD DYQLSLAEER RKRRMISNRE SARRSRMRKQ KQLSELWAQV VHLRSTNRQL 120 LDQLNHAIRD CDRVLHENSQ LRDEQTKLQK QHEKLPVETT GSGVMSPDS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 79 | 100 | RRKRRMISNRESARRSRMRKQK |
2 | 92 | 99 | RRSRMRKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG400500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953778.1 | 1e-116 | basic leucine zipper 8 | ||||
TrEMBL | A0A3L6RPG1 | 1e-117 | A0A3L6RPG1_PANMI; Basic leucine zipper 43 | ||||
STRING | Pavir.Aa00472.1.p | 1e-123 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1186 | 35 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30530.1 | 8e-26 | basic leucine-zipper 42 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG400500.1.p |